d3b-center hope-cohort-analysis issues

d3b-center / hope-cohort-analysis

Analysis for HOPE cohort

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Update oncoplots

#116 komalsrathi opened 1 week ago
0
Update survival

#115 komalsrathi opened 1 week ago
0
Update MSI analysis

#114 komalsrathi opened 2 weeks ago
0
Update order of analyses

#113 komalsrathi opened 2 weeks ago
0
Update ALT-analysis

#112 komalsrathi opened 2 weeks ago
0
Update data and sample availability plots

#111 komalsrathi opened 2 weeks ago
0
Update TMB calculation

#110 komalsrathi opened 2 weeks ago
0
Update master annotation file

#109 komalsrathi opened 2 weeks ago
1
Update HGG subtyping

#108 komalsrathi opened 2 weeks ago
0
update dockerfile to R4.4, reorg

#107 jharenza opened 2 weeks ago
5
Update tp53_nf1_score module

#106 komalsrathi opened 2 weeks ago
0
Update merge files code

#105 komalsrathi opened 2 weeks ago
0
Add two samples' genomic data back to HOPE cohort

#104 jharenza opened 2 weeks ago
3
Update dockerfile to use R 4.4/BioC 3.19

#103 jharenza opened 1 month ago
0
Remove 7316-3625 from manuscript plots/master annotation file

#102 komalsrathi closed 3 months ago
0
Update manuscript plots

#101 komalsrathi closed 3 months ago
0
Dockerfile update

#100 jharenza closed 3 months ago
1
Update circlize package to >= 0.4.14

#99 jharenza closed 3 months ago
1
Add master annotation

#98 komalsrathi closed 3 months ago
1
Annotation file for data availability plot

#97 komalsrathi closed 3 months ago
4
Update annotation file

#96 komalsrathi closed 4 months ago
0
Add PXA and Cancer_Group (Expanded abbreviation) column to annotation file

#95 jharenza closed 4 months ago
2
Update age continuous color

#94 komalsrathi closed 4 months ago
1
Update cascade plots

#93 komalsrathi closed 4 months ago
3
Update README.md

#92 JosephDybas closed 6 months ago
0
Update README.md

#91 JosephDybas closed 6 months ago
0
Update: Cascade Plots (All genes)

#90 komalsrathi closed 4 months ago
0
Update: Cascade Plots (Top 20 genes)

#89 komalsrathi closed 4 months ago
0
Update: Data availability circos plot

#88 komalsrathi closed 4 months ago
6
Update: ALT Analysis

#87 komalsrathi closed 3 months ago
5
Move Pleomorphic xanthoastrocytoma into cancer_group_short HGG

#86 jharenza opened 7 months ago
1
Change the label of alluvial plot

#85 zzgeng closed 7 months ago
0
add ALT to survival analysis

#84 zzgeng closed 3 months ago
1
Add ggalluvial package to dockerfile

#83 zzgeng closed 7 months ago
2
Update Docker files

#82 zzgeng closed 7 months ago
1
Add workflow to HGG molecular subtyping

#81 zzgeng closed 7 months ago
1
Rerun analyses

#80 komalsrathi closed 6 months ago
12
GSVA analysis of proteomics data

#79 JosephDybas closed 4 months ago
6
Harmonize HOPE_diagnosis_type in histologies file

#78 komalsrathi closed 6 months ago
1
October 2023 figures updates

#77 mkoptyra closed 6 months ago
31
Add predicted ancestry to TP53 score summary plot

#76 zzgeng closed 7 months ago
1
Modify README file to update analysis modules list and descriptions

#75 JosephDybas opened 8 months ago
4
Add workflow of how molecular subtype has been done

#74 zzgeng closed 7 months ago
1
add binned age for 16-40, 2 group AYA

#73 jharenza closed 8 months ago
0
revert sample removal - not subtyped anyway

#72 jharenza closed 8 months ago
1
Add readme to molecular-subtyping-HGG module

#71 zzgeng closed 8 months ago
0
V2 release: Update download script for v2

#70 zzgeng closed 7 months ago
1
restore snv counts for AYA

#69 jharenza closed 8 months ago
0
Add CPTAC GBM TP53 mutations

#68 jharenza closed 8 months ago
1
generate telomere ratio

#67 jharenza closed 8 months ago
0