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d3b-center
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hope-cohort-analysis
Analysis for HOPE cohort
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restore snv counts for AYA
#69
jharenza
closed
11 months ago
0
Add CPTAC GBM TP53 mutations
#68
jharenza
closed
11 months ago
1
generate telomere ratio
#67
jharenza
closed
12 months ago
0
Add sample_id column in combined_score.tsv
#66
zzgeng
closed
11 months ago
1
V2 histology file: Add cancer_group_short column in final histology file
#65
zzgeng
closed
10 months ago
0
Add K28I mutation in HGG mutation
#64
zzgeng
closed
11 months ago
0
V2 data release
#63
zzgeng
closed
10 months ago
2
Reform proteomic output data (2/N)
#62
zzgeng
closed
10 months ago
2
Add readme to proteomic-data (1/N)
#61
zzgeng
closed
11 months ago
1
Revert "Add BS_id to proteomic data"
#60
zzgeng
closed
1 year ago
0
Proteomic-data module update
#59
zzgeng
closed
10 months ago
3
Update README.md
#58
jharenza
closed
11 months ago
0
Survival analysis for HOPE cohort (2/2)
#57
zzgeng
closed
11 months ago
2
Add summary stats plot for tp53 score (1/2)
#56
zzgeng
closed
11 months ago
1
Add new integrated dx from pathology review
#55
jharenza
closed
1 year ago
0
Update 4844 subtyping
#54
jharenza
closed
1 year ago
1
Add CPTAC sample tp53 score
#53
zzgeng
closed
1 year ago
0
Re-run analyses
#52
komalsrathi
closed
9 months ago
0
Fix tp53 script CNV issue
#51
zzgeng
closed
1 year ago
0
Use histology file to filter samples
#50
komalsrathi
closed
1 year ago
0
Regenerate files with new base histology file
#49
zzgeng
closed
1 year ago
3
Add gitignore and remove files in scratch
#48
zzgeng
closed
1 year ago
0
Update in molecular_subtyping module: change the script to use both cnv files as input (2/2)
#47
zzgeng
closed
1 year ago
0
remove files from scratch, add gitignore
#46
jharenza
closed
1 year ago
1
Update in tp53 score module: change the script to use both cnv files as input (1/2)
#45
zzgeng
closed
1 year ago
0
fwrite tab delimited
#44
komalsrathi
closed
1 year ago
0
Liftover the gene symbol for Proteomic/Phospho data
#43
zzgeng
closed
10 months ago
1
Re-run tp53 score and molecular subtyp module with updated histology file
#42
zzgeng
closed
1 year ago
0
Add BS_id to proteomic data
#41
zzgeng
closed
1 year ago
1
Add proteomics matrices
#40
jharenza
closed
12 months ago
1
Set up GitHub action for docker
#39
zzgeng
closed
8 months ago
1
Update docker file to add missing packages
#38
zzgeng
closed
1 year ago
1
Packages missing from dockerfile
#37
jharenza
closed
1 year ago
1
Add release note
#36
zzgeng
closed
1 year ago
0
New merge files for s3 v1 folder
#35
jharenza
closed
1 year ago
9
Add pathology based on molecular subtyping results (5/N)
#34
zzgeng
closed
1 year ago
3
Generate plot for tp53 score across gender, molecular_subtype, race and age
#33
zzgeng
closed
11 months ago
1
Change the download directory for gencode 39
#32
zzgeng
closed
1 year ago
0
Re-merge MAF files
#31
jharenza
closed
1 year ago
15
README for all modules
#30
komalsrathi
closed
1 year ago
0
Organize code
#29
komalsrathi
closed
1 year ago
1
Organize directories and code
#28
komalsrathi
closed
1 year ago
0
add PXA BRAF V600E to subtyping
#27
jharenza
closed
1 year ago
1
Filter fusion files based on the gene expression
#26
zzgeng
closed
1 year ago
2
add script for molecular subtyping (4/N)
#25
zzgeng
closed
1 year ago
1
Add script to subset files for molecular subtyping (3/N)
#24
zzgeng
closed
1 year ago
0
Annotate fusions
#23
komalsrathi
closed
1 year ago
5
Update `Hope-fusion-putative-oncogenic.rds`
#22
jharenza
closed
1 year ago
1
Add molecular subtyping hgg module
#21
zzgeng
closed
1 year ago
1
Add tp53 score module (2/N)
#20
zzgeng
closed
1 year ago
0
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