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1. I assume this question is referring to my code in general. Much of my code is for dealing with microscopy images. So usually I have a folder of example images and I'll run the code on that example.…
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**User story**
I was told that [gamma correction](https://en.wikipedia.org/wiki/Gamma_correction) would be very useful when viewing microscopy images. Currently, only linear clamping with sliders i…
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## Background Rolling Ball Algorithm for background estimation/subtraction
The rolling ball algorithm is a well-known method for background subtraction.
(reference Stanley Sternberg's article,
…
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Add an option to specify the "instrument resolution" for microscopy images.
Then it will cut off the PSD at the q corresponding to that resolution.
From a usability and functionality standpoin…
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# Summary
The implementation of DICOM to WSI initiated a concise way to package digital pathology images to enable interoperability. We propose to enable the power of DICOM at the intersection where …
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I downloaded the dataset `data_axondeepseg_tem` from git annex using these instructions: https://github.com/neuropoly/data-management/blob/master/internal-server.md#download
All the files in the fo…
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Hi, would it be possible to get some additional documentation regarding the data format in which the images need to be stored? From the basic example it seems like both reference image and altered ima…
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**Submitting author:** @nanthony21 (Nicholas Anthony)
**Repository:** https://github.com/BackmanLab/PWSpy
**Branch with paper.md** (empty if default branch):
**Version:** 1.0.0
**Editor:** @jgost…
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Mentioned in the article: "This work is dedicated for fluorescence microscopy denoising where the images are corrupted by Poisson-Gaussian noise; in particular,**Poisson noise**, or shot noise, is the…
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#### Minimal, reproducible code sample, a copy-pastable example if possible
```python
In ensure_contiguous_ndarray:
if arr.flags.c_contiguous or arr.flags.f_contiguous:
# can flatten…