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Hi, I was trying to add hydrogens to a protein's PDB file with obabel using -p option and got every TRP residues with wrong hydrogens.
`obabel input.pdb -O output.pdb -p 7.4`
Here is the PyMOL v…
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**Pre-filing checks**
- [ x ] I have searched for open issues that report the same problem
- [ x ] I have checked that the bug affects the latest version of the library
**The URL of the recipe(…
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currently implemented with https://github.com/Arcadia-Science/2022-actin-prediction/blob/main/blast.snakefile#L46-L53. It didn't work for 1k protein seqs and I didn't figure out why.
The tool in th…
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Can be replicated with https://github.com/IRL2/nanover-server-py/pull/276
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This jupyter notebook is empty - was there a different file uploaded?
https://github.com/asapdiscovery/asapdiscovery/blob/main/examples/protein_and_ligand_prep.ipynb
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Molecule.from_file() can not read pdb file, what should I do? thank you
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Currently we compare peptide sequences against a reference proteome from Ensembl.
It would be more correct to create a proteome that incorporated SNPs that impact protein sequence and then look f…
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Hi team, thank you for your impressive work.
Unfortunately, I encountered a problem when generating homooligomeric complexes. The monomer length is 641 amino acids, but when I add more of the same …
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Hi,
Thanks for the great tool!
I just noticed that some of the output protein sequences contain "*" in between the output PEP sequences. What could be the reason? The tail '*' defines the STOP codan…
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There is a discrepancy in the glycosylation summary.
`UAC - Q08048`
On the portal and the API it says there are **`4 site(s) total, 6 N-linked site(s)`**
However, there are only 4 N-linked site…