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Hello :)
I have a question regarding viral-ngs and its capabilities for detecting virus integration and outputting the results to a text file. I tried to understand the explanation provided in the …
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## WHAT
**Write** execution workflow for [MISO](http://hollywood.mit.edu/burgelab/miso/). Use the provided [small files for testing](https://github.com/iRNA-COSI/APAeval/tree/main/tests/test_data…
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https://github.com/gmgitx/BLOG_natural_science/issues/2
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https://snakemake.readthedocs.io/en/stable/snakefiles/configuration.html
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@jds485 pointed out to me today that the container docs/container for this repository are out of date. We set up the container awhile back and no one really switched to using it from their conda envi…
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Add a comment to this issue to join the https://github.com/workflowhub-eu team.
There are no obligations in being a contributor except abiding by our [code of conduct](https://github.com/workflowhu…
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I am running snakemake from a conda environment from a screen on an LSF cluster. 'pip freeze' tells me I'm running snakemake==5.6.0 (python 3.6.8), and I've seen the same behaviour with snakemake==5.4…
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**Snakemake version**
7.32.4 (also 7.22.0)
**Describe the bug**
Global variables defined in a snakefile do not get resolved when the snakefile is imported as a module. Adding the variable def…
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Vfork support requires some refactoring of plugin layers wrt. PRESUSPEND barrier. The make-check-vfork* tests are disabled for now.
If someone requires vfork support, please upvote this issue.
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This question is a follow-up/bump to unresolved issue #1275 on BitBucket, which I cannot access anymore ([old link](https://bitbucket.org/snakemake/snakemake/issues/1275/ftp-remote-inputs-seem-to-slow…