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I thought I would move our discussion for documentation here, just so that if members of the community wanted to add things they could and I could put them in what I think is a rough priority order:
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zm711 updated
7 months ago
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I've setup KiloSort 2, 2.5 and 3 and am testing for tetrode recordings via SpikeInterface. The data is 30ks Open Ephys data, processed in SpikeInterface and sent identically to KiloSort2, 2.5 and 3. T…
eejd updated
9 months ago
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Hi I am using this to evaluate the quality of my recordings : https://allensdk.readthedocs.io/en/latest/_static/examples/nb/visual_behavior_neuropixels_quality_metrics.html#d-prime
I am not able us…
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I would like to provide an option to split recordings before preprocessing so recordings can be pre-processed per shank. There are alternatives (e.g. `groups` in the `common_reference` module) but thi…
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So after using the extensions some more I have a couple ideas that I wanted to jot down just to think about.
## 1
One the error messaging isn't super helpful right now for two reasons. One I think…
zm711 updated
8 months ago
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Hi,
This error below is new and never happened before while trying to extract waveforms from sorted data. Below is the code:
``sorting_KS25 = ss.read_sorter_folder(base_folder/"results_KS25")
sorti…
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Hi Spikeinterface,
There seems to be an issue in the spikeinterface set_probes function in the core packages.
I am trying to set a probes to a recording but I get this error :
```
---------…
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Issue from SpikeInterface/spikeinterface#1469
The first sample in a spikeGLX recording is missing with neo extracting, which is a piece of information that can be very useful.
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Hi @alejoe91,
I am trying to load an open ephys neuropixel recording and I am getting the following error.
```
File ~\anaconda3\envs\spkint\lib\site-packages\spikeinterface\extractors\ne…
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### What happened?
The following tests fail when running the test suite:
```
FAILED tests/test_minimal/test_tools/test_backend_and_dataset_configuration/test_helpers/test_configure_backend_defa…