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When running `pip install autopacmen-Paulocracy`, all dependencies are installed as well as the package metadata. However, none of the actual scripts in the package are installed. When checking the Py…
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Hi
I am testing _sbml2sbtab.py_ from https://github.com/tlubitz/SBtab/blob/master/python/sbml2sbtab.py
I installed sbtab with the archive from pip and I had to change `except: import SBtab` into `…
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We know that vimtex has `tsd` to toggle of `(` and `)` between `\left(` and `\right)` and so on. I have read the related section `g:vimtex_delim_list` but still stacked at how to add `gtsd` to toggle …
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i was using server
all other math equations on other articles did not have any error, this is the first one
`\ N = \frac{\log \, \bigg[ \Big(\frac{X_d}{1-X_d}\Big)\Big(\frac{1-X_b}{X_b} \Big) \bigg]…
ghost updated
4 years ago
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I'm working on insect vector metabolism (mostly on yellow fever/Zika vector Aedes aegypti) and have quantitative proteomic and untargeted metabolomic data for several experimental conditions. Searchi…
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Hi, I'm trying to run carve but initially hit the error:
"Searching alignments... Failed to run diamond."
I then ran the specific diamond command:
diamond blastp -d /miniconda2/lib/python2.7/si…
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While I'm using markdown with MathJax script, \Bigg{ it is not rendered as "{" it's showing the same MathJax string, but the other markdowns are rendered properly, any known thing to solve the issue ?…
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_From @matthiaskoenig on June 11, 2018 13:2_
FBA simulations with all BiGG models should be performed and compared against reference solutions from cobrapy.
BiGG models are not part of the reposito…
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Identifiers.org (MIRIAM) can resolve ids. But, it typically resolves ids to web pages that describe entities. I'm not aware that Identifiers.org can directly resolve data for entities (e.g., XML files…
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When comparing the results of simple FBA simulations of cobrapy with SBSCL the following two BiGG models give different results:
```
objective_value_cobrapy mid objective_value_sbscl identical
1…