draeger-lab SBSCL issues

draeger-lab / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

https://draeger-lab.github.io/SBSCL/

GNU Lesser General Public License v3.0

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issues

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Errors are detected when running some SBMLTestSuite case.

#74 TlexCypher opened 10 months ago
8
download_bigg_models.sh throws ERROR 404

#73 funasoul opened 1 year ago
2
Match the version of JSBML that we have in maven central.

#72 funasoul closed 1 year ago
1
Exchangable solvers

#71 draeger opened 1 year ago
0
Support pure Java solver for constraint-based modeling

#70 draeger opened 1 year ago
0
Update the project's website

#69 draeger opened 2 years ago
0
Improve the curation level on BioSimulators

#68 draeger opened 2 years ago
1
BioModels support

#67 hemilpanchiwala closed 3 years ago
3
Update path for stochastic tests

#66 hemilpanchiwala closed 3 years ago
0
Minor update in pom.xml

#65 hemilpanchiwala closed 3 years ago
0
Updates in the BiGG models test

#64 hemilpanchiwala closed 3 years ago
0
Upload SBSCL to mvnrepository

#63 matthiaskoenig closed 3 years ago
3
Update Maven dependency documentation (version 2.0)

#62 matthiaskoenig closed 3 years ago
1
Refactors

#61 curiousleo closed 3 years ago
2
Fewer BigDecimal conversions

#60 curiousleo closed 3 years ago
2
Fix ErrorProne issues and Bash download script

#59 curiousleo closed 3 years ago
1
Bump junit from 4.11 to 4.13.1

#58 dependabot[bot] closed 3 years ago
0
Documentation Pull Request

#57 hemilpanchiwala closed 3 years ago
3
Formatting Pull Request

#56 hemilpanchiwala closed 4 years ago
2
Refactor FERN classes to use SBSCL classes

#55 hemilpanchiwala opened 4 years ago
1
Support for stochastic simulation added

#54 hemilpanchiwala closed 4 years ago
9
Add stochastic simulation through FERN to SBSCL

#53 hemilpanchiwala closed 4 years ago
0
Terminology, Power and Oppressive Language in Computer Science

#52 draeger closed 4 years ago
2
FBA tests fail on parallel testing

#51 hemilpanchiwala closed 4 years ago
2
Simulation of SBML models with changing compartment size

#50 hemilpanchiwala closed 4 years ago
4
Support for FBA FROG analysis

#49 matthiaskoenig opened 4 years ago
0
GSoC - SBML L3V2 models support with some other bug fixes

#48 hemilpanchiwala closed 4 years ago
8
SBML L3V2 tests failing with no identified reason yet

#47 hemilpanchiwala closed 4 years ago
1
Add delay property to the rateOf function

#46 hemilpanchiwala opened 4 years ago
1
Misinterpretation of function variables with parameters

#45 hemilpanchiwala opened 4 years ago
0
Event triggers before the mentioned condition

#44 hemilpanchiwala opened 4 years ago
4
Add support for rateOf csymbol

#43 hemilpanchiwala closed 4 years ago
12
Add functions in ASTNodeInterpreter class for calculating node values of SBML L3V2 models

#42 hemilpanchiwala closed 4 years ago
1
Simulation of models with reaction without reactants and products

#41 hemilpanchiwala closed 4 years ago
0
Resolves issues of SBMLTestSuite and FBA

#40 hemilpanchiwala closed 4 years ago
4
SBML TestSuite semantic/01592 takes 15-25 minutes to run

#39 matthiaskoenig opened 4 years ago
10
SBML TestSuite failing test semantic/01488/01488 `java.lang.ArithmeticException: arcsech(0) undefined`

#38 matthiaskoenig closed 4 years ago
4
Travis fix & JSBML update

#37 hemilpanchiwala closed 4 years ago
0
Some comp tests are failing due to JSBML flattening

#36 matthiaskoenig opened 4 years ago
4
Update the SBMLTestSuite Runner for L3V2

#35 matthiaskoenig closed 4 years ago
4
Travis tests are currently failing

#34 matthiaskoenig closed 4 years ago
8
Build icon in README links to incorrect page

#33 matthiaskoenig closed 4 years ago
2
Update to JSBML 1.5

#32 draeger closed 4 years ago
0
fixed issue in OMEXArchive

#31 hemilpanchiwala closed 4 years ago
0
update COBRAsolver to add weighted constraints

#30 hemilpanchiwala closed 4 years ago
1
SBML Version Support Documentation

#29 rsivek closed 3 years ago
4
Included all authors in readme

#28 MariaHei closed 5 years ago
0
Example OMEX file contains wrong model file name

#27 draeger closed 5 years ago
0
Deleting the dist folder

#26 shalinshah1993 closed 6 years ago
2
Comp example file missing

#25 shalinshah1993 closed 6 years ago
3