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draeger-lab
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SBSCL
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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Errors are detected when running some SBMLTestSuite case.
#74
TlexCypher
opened
10 months ago
8
download_bigg_models.sh throws ERROR 404
#73
funasoul
opened
1 year ago
2
Match the version of JSBML that we have in maven central.
#72
funasoul
closed
1 year ago
1
Exchangable solvers
#71
draeger
opened
1 year ago
0
Support pure Java solver for constraint-based modeling
#70
draeger
opened
1 year ago
0
Update the project's website
#69
draeger
opened
2 years ago
0
Improve the curation level on BioSimulators
#68
draeger
opened
2 years ago
1
BioModels support
#67
hemilpanchiwala
closed
3 years ago
3
Update path for stochastic tests
#66
hemilpanchiwala
closed
3 years ago
0
Minor update in pom.xml
#65
hemilpanchiwala
closed
3 years ago
0
Updates in the BiGG models test
#64
hemilpanchiwala
closed
3 years ago
0
Upload SBSCL to mvnrepository
#63
matthiaskoenig
closed
3 years ago
3
Update Maven dependency documentation (version 2.0)
#62
matthiaskoenig
closed
3 years ago
1
Refactors
#61
curiousleo
closed
3 years ago
2
Fewer BigDecimal conversions
#60
curiousleo
closed
3 years ago
2
Fix ErrorProne issues and Bash download script
#59
curiousleo
closed
3 years ago
1
Bump junit from 4.11 to 4.13.1
#58
dependabot[bot]
closed
3 years ago
0
Documentation Pull Request
#57
hemilpanchiwala
closed
3 years ago
3
Formatting Pull Request
#56
hemilpanchiwala
closed
4 years ago
2
Refactor FERN classes to use SBSCL classes
#55
hemilpanchiwala
opened
4 years ago
1
Support for stochastic simulation added
#54
hemilpanchiwala
closed
4 years ago
9
Add stochastic simulation through FERN to SBSCL
#53
hemilpanchiwala
closed
4 years ago
0
Terminology, Power and Oppressive Language in Computer Science
#52
draeger
closed
4 years ago
2
FBA tests fail on parallel testing
#51
hemilpanchiwala
closed
4 years ago
2
Simulation of SBML models with changing compartment size
#50
hemilpanchiwala
closed
4 years ago
4
Support for FBA FROG analysis
#49
matthiaskoenig
opened
4 years ago
0
GSoC - SBML L3V2 models support with some other bug fixes
#48
hemilpanchiwala
closed
4 years ago
8
SBML L3V2 tests failing with no identified reason yet
#47
hemilpanchiwala
closed
4 years ago
1
Add delay property to the rateOf function
#46
hemilpanchiwala
opened
4 years ago
1
Misinterpretation of function variables with parameters
#45
hemilpanchiwala
opened
4 years ago
0
Event triggers before the mentioned condition
#44
hemilpanchiwala
opened
4 years ago
4
Add support for rateOf csymbol
#43
hemilpanchiwala
closed
4 years ago
12
Add functions in ASTNodeInterpreter class for calculating node values of SBML L3V2 models
#42
hemilpanchiwala
closed
4 years ago
1
Simulation of models with reaction without reactants and products
#41
hemilpanchiwala
closed
4 years ago
0
Resolves issues of SBMLTestSuite and FBA
#40
hemilpanchiwala
closed
4 years ago
4
SBML TestSuite semantic/01592 takes 15-25 minutes to run
#39
matthiaskoenig
opened
4 years ago
10
SBML TestSuite failing test semantic/01488/01488 `java.lang.ArithmeticException: arcsech(0) undefined`
#38
matthiaskoenig
closed
4 years ago
4
Travis fix & JSBML update
#37
hemilpanchiwala
closed
4 years ago
0
Some comp tests are failing due to JSBML flattening
#36
matthiaskoenig
opened
4 years ago
4
Update the SBMLTestSuite Runner for L3V2
#35
matthiaskoenig
closed
4 years ago
4
Travis tests are currently failing
#34
matthiaskoenig
closed
4 years ago
8
Build icon in README links to incorrect page
#33
matthiaskoenig
closed
4 years ago
2
Update to JSBML 1.5
#32
draeger
closed
4 years ago
0
fixed issue in OMEXArchive
#31
hemilpanchiwala
closed
4 years ago
0
update COBRAsolver to add weighted constraints
#30
hemilpanchiwala
closed
4 years ago
1
SBML Version Support Documentation
#29
rsivek
closed
3 years ago
4
Included all authors in readme
#28
MariaHei
closed
5 years ago
0
Example OMEX file contains wrong model file name
#27
draeger
closed
5 years ago
0
Deleting the dist folder
#26
shalinshah1993
closed
6 years ago
2
Comp example file missing
#25
shalinshah1993
closed
6 years ago
3
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