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Currently, species information can be found in multiple locations. Off the top of my head:
metadata/datasets/*.yaml['species_code']
./scripts/downloads-page-gen.py
./metadata/go-reference-species…
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It might be helpful users if we could add an 'announcements' banner to the Noctua landing page that could be used to announce, amongst other things, planned outages.
This would likely be an effecti…
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We have some relations in go-edit/go-plus
```
id: GO:0005741
name: mitochondrial outer membrane
namespace: cellular_component
def: "The outer, i.e. cytoplasm-facing, lipid bilayer of the mitoch…
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db-xrefs.yaml use abbreviated forms for the prefixes for these two databases (we retain the expanded form as synonyms)
the expanded form is more standard, e.g.:
https://prefixcommons.org/?q=worm…
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0016231 beta-N-acetylglucosaminidase activity (21 EXP annotations)
GO:0102148 N-acetyl-beta-D-galactosaminidase activi…
sjm41 updated
6 months ago
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Input: 1 ontologies (e.g. GOPlus and GOPlus with the addition of axioms for MFs generated from RHEA)
Output: table showing new inferences resulting from addition of new axioms along with explanations
goodb updated
5 years ago
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https://github.com/geneontology/amigo/issues/378
made me realise the workflow has changed slightly at some point.....
At one point, if I searched on a term (e.g mitotic cell cycle), I got to the ter…
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Occasionally, during GOlr loads on Jenkins, there will be periods of time where the upstream ontologies timeout or otherwise fail due to somewhat mysterious circumstances. Manually probing after such …
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The entry for GO_REF in db-xrefs.yaml states that the generic_url for GO_REF is http://purl.obolibrary.org/obo/go/references/
This doesn't work:
`
NoSuchKey
The specified key does not exist.
…
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When creating the GO covid-19 page, had some issue with "other" group showing same results as "all" group.