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Hi guys,
I'll update you more tomorrow, but i'm making progress of the betadiversity analysis.
When you have a moment, please send me a env matrix, with the To and From columns matching the siteXsp…
bw4sz updated
10 years ago
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The analysis macro is really a mess, I reckon it.
Mostly the problems derive from the huge file handling, memory parsimony requirements,
and parallel calculation.
One issue is that the information o…
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Hello, thanks for this tool.
I have a couple of questions and I would appreciate some guidance on how to move forward.
(1) I ran one sample in CopyKat. The output CNAmatrix looks something like th…
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Hi velocyto-team,
Velocyto.py is a powerful pipline for single cell RNAseq analysis, thanks a lot to your excellent job.
I'm fresh in RNA velocity ananlysis and recently I met some issue abo…
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I'm trying to use the function run_viper to calculate transcription factor activity based on an earlier differential expression analysis I ran but running the following line:
tf_activities_stat
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你好，我对文章中关于SCENIC的分析过程很感兴趣，但是根据文章的描述，不太确定我的理解是否正确。
根据文章内容，分析的第一步是单独使用正常样品的raw count进行SCENIC分析，预测了每个细胞类型特异的TFs，随后依次把每个来自疾病样本的细胞类型的raw count进行SCENI分析。不知道我的理解是否准确？希望能得到答复，非常感谢！
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**Describe the bug**
While investigating connectivity issue to my coturn server I discovered that changes on the turn settings in my syampse-server aren't pickup by element. I could clearly see the r…
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I'd like to be able to input a contrast design (or otherwise choose design factors), to do a one vs all comparison within in a particular "condition" that has more than two levels. If my column "condi…
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Hi @sjfleming ,
this is not a bug, just a addition for the readthedocs.
As you correctly write, cellbender h5 output cannot be loaded into Seurat via `Read_10x_h5` without additional preprocessi…
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Project UUID: cddab57b-6868-4be4-806f-395ed9dd635a
Project Title: Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.
Proj…