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@neilotte suggested that would be good to have a curated, up-to-date list of software tools that are especially useful for working with OBO. This could be a single page added to the obofoundry.org web…
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This needs to be wired up to longestOnly param in https://github.com/monarch-initiative/monarch-ui/blob/e682ddf/src/api/BioLink.js#L654
- [x] Move url from scigraph to https://api.monarchinitiative…
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### This super monitors migration of content from monarch-app to monarch-ui
- Answer the question '___Move?___' to denote whether or not the page is being migrated from monarch-app (old site) to th…
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See https://github.com/monarch-initiative/mondo/issues/1450
The new Monarch UI has 2 links to OMIM phenotypic series on this page: https://monarchinitiative.org/disease/MONDO:0015194
The one con…
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The paths and file names of the Monarch RDF downloads have changed several times during the past year. I only notice this when my pipeline breaks. The latest was moving `https://archive.monarchinitiat…
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autism (disease) (MONDO:0005260)
Xref that should be fixed (MeSH: D001321)
**Other comments:**
Just wondering why MeSH: D001321 is no longer included in this entry?
Thanks
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Analyze Phenotypes is now live in beta. Please test this vigorously and report bugs here!!
@monicacecilia @jmcmurry @kshefchek @pnrobinson
https://beta.monarchinitiative.org/analyze/phenotypes
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I couldn't find the ticket for this so I've made a new one.
Here are the current load warnings for the disease annotations files.
Warnings from pombe-embl/external_data/disease/pombase_disease_a…
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On disease pages, when you click on phenoes or genes, you see relations like "has phenotype", which makes sense. When on a phenotype page, gene pages like https://monarchinitiative.org/phenotype/HP:00…
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How do I locate obsoleted terms?
I'm trying to trace the fate of
"could not find cvterm for MONDO:0018859 - maybe obsolete? Skipping annotation for SPBC1215.01 / leigh_syndrome_nuclear_dna_muta…