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https://github.com/PolusAI/bfio/blob/75c588d60cec3cdfc0a24886acd90c89a0703be6/bfio/backends.py#L463 attempts to set self.index of tifffile.TiffFrame but new versions of tifffile.TiffFrame has the @fin…
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We have extremely basic Zarr support but we want:
- [ome Zarr](https://ome-zarr.readthedocs.io/en/stable/)
- Whatever kind of TIFF layout is used by Vizgen
Others?
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Hello @Yu-AnChen!
I produced some amazing registrations with PALOM!
Unfortunately, I have encountered and error for big images which I think is due to the size of these images.
Is there I size …
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The package has been developed to offer a seamless Java and Python interface. While I appreciate its usefulness for my ongoing projects, which are in C++, I would like to leverage the OME-bioformats t…
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In [`8db4024`](https://github.com/BioImage-Archive/upptime/commit/8db402412b884ffe0432cce02383cf0c71086a43
), S-BIAD531-TFER-HTTP (https://ftp.ebi.ac.uk/biostudies/fire/S-BIAD/531/S-BIAD531/Files/Zebr…
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I use the bioformat API to convert JPG to tiff. It is found that the converted TIFF file (pyramid) cannot be opened with openslide. Only tile TIFF is supported
```java
ImageConverter converter = ne…
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On Ubuntu22.04.3LTS Windows10 (GNU/Linux 5.15.133.1-microsoft-standard-WSL2 x86_64)
After successful run with example images.
Using these images:
Mask:
https://drive.google.com/file/d/1XGUf9os…
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Hi all!
I am getting a 'No objects to concatenate' error when trying to use the pipeline. I have already checked the zipped .mcd-files and the panel-.csv-file multiple times and also the directories …
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Issue was raised on forum thread https://forum.image.sc/t/issues-with-ndpi-wsi-conversion-to-ome-tiff-concerning-kheops-qupath-ome-types/69862/8 and could be reproduced with the provided sample file a…
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**Describe the bug**
Getting "undefined" error after hitting upload button on website.
**To Reproduce**
Steps to reproduce the behavior:
Upload by drag and drop or by choosing file.
Choose an…