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in simple-use-case.md:
For added linux fun!, let's try to create the sqldb to fully copy Titus' bash command. If we look at the [sourmash documentation](https://sourmash.readthedocs.io/en/latest/data…
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Hi (again) Adelme,
Using `ppanggolin write -p pangenome.h5 --families_tsv` it's possible to extract gene families for the entire pangenome. But is it possible to extract only gene families from RGP…
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### Version
1
### DataCap Applicant
Neal
### Project ID
17
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### D…
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Link to files + code that reproduce the crash on my system (Fedora 39 Linux 6.6.13-200.fc39.x86_64) at the end.
## Description
GGCAT API seems to have a bug where using the API to build many (> …
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Hello,
I'm trying to run panaroo (without alignment) with 22416 genomes.
Although I'm using 20 threads, it seems like the process is just parallelised at the beginning, and I'm afraid it is gonna t…
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### Version
1
### DataCap Applicant
neal
### Project ID
13
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### D…
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**1. What were you trying to do?**
Convert an xg graph to gfa, make a small edit, and then convert to pg.
**2. What did you want to happen?**
I wanted a pg graph with all the paths included.
…
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app installed with conda on ubuntu server
I then defined GETORG_PATH and ran `get_organelle_config.py --add embplant_pt,embplant_mt` with success
Hi,
I want to obtain the 4 possible circular p…
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# nf-core/pangenome feature request
Hi there!
## Describe the solution you'd like
I want to be able to start the pipeline with a folder of FASTAs as an input. All current steps should be run …
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I am wondering this to better understand how the layout algorithm works. In linear mode, the graph would be stretched longer, I would assume? Would it also make it more human readable?
By default in…