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I was wondering whether there are any plans to add a feature where parts of the sequence being generated are fixed while others are sampled such that small segments of the protein can be designed. Tha…
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### Prize Bounty
USD **$10,000** First Prize
USD **$7,000** Second Prize
USD **$3,000** Third Prize
### **Challenge Description**
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) …
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Wounds have been a feature the devs have been discussing for a while, and it's high time I lay out some low-level discussion on wounds. We've already talked about high-level topics and general ideas a…
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@lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC @sbb25 @phillipeloher
Hi all,
It will be a little long email, but please take 15 min to go over…
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(Please correct me if I am misunderstanding any of these components! Thanks @swails for pointing out some of this info appears in the manual.)
The **OpenMM System Tests**, used to test release candi…
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**Source file:**
downloads/pdc/current/ccRCC_TMT_intact_glycopeptide_abundance_MD-MAD.tsv
**Mapping files:**
unreviewed/human_protein_masterlist.csv
generated/misc/pdc_glytoucan_mapping.csv
u…
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Hi @althonos and many thanks for maintaining and pushing forward this wonderful project!
I just started to use PyHMMER in Bakta for user-provided HMMs. Here, I'd like to provide the users with an o…
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We need to have an ORF finder for the transcriptome that is flexible to non-AUG start codons. Ideally this would also output ORFs in a gff format testable by extending `check_gff_fasta.py`
Similar …
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- [ ] Establish a set of principles for this design
- [ ] Create a standard with examples for each potential entry type, always abiding by the principles defined
- [ ] Refactor the forming of the mess…