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# Describe the problem
* **I'm submitting a:**
- [ ] problem running the software
- [x] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [x] _Closed_…
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The theoretical B-factors I obtained from the pip installed software and the ANM (http://anm.csb.pitt.edu/cgi-bin/anm2/anm2.cgi) or GNM(http://enm.pitt.edu/) servers are not equal. I used coordinates …
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I've noticed some issues with music in the GoldSRC version of Half-Life, at least while playing on my Ubuntu 15.04 box. May or may not be Linux specific.
Distro: Ubuntu 15.04 64 bit
Window Manager: Un…
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![20190613170549](https://user-images.githubusercontent.com/50605360/59419575-c00f9600-8dfd-11e9-89d6-694266de26dc.png)
I only run Umpirese, have an error: 'Process returned non-zero exit code, sto…
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## Expected Behavior
It was working before. Same database and protein sequences
## Current Behavior
:(
## Steps to Reproduce (for bugs)
Please make sure to execute the reproduction steps with…
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# Describe the problem
I almost get equal numbers of 'real' (1509) and 'rev_' (1651) proteins in the final output file.
This seems to be traced back to the 'Mapped Proteins' column in the 'peptid…
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Log
System info:
System OS: Windows 10, Architecture: AMD64
Java Info: 1.8.0_211, Java HotSpot(TM) 64-Bit Server VM, Oracle Corporation
Version info:
FragPipe version 9.4
MSFragger version …
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Yesterday, I update my Nextcloud 15 to Nextcloud 16.0.1 and everything looked fine (just for context). Today, I saw the new 16.0.2 version and started the update and it finished without any problems `…
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The `convertalis` command exits with an error when no match is found in the DB. Maybe this could be caught by the web server and an informative message could be displayed in the results page (instead …
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@ToniNittolo Write skeleton for this advanced tutorial. It should be housed under Additional Analyses.
**1. Background on the use of protein structure prediction tools to predict function**
- Pr…