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Dear All,
I am looking at the Decontam vignette but I am stuck at the beginning where you read in the data with the following code:
> ps
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Hi,
I generated the phyloseq object from DADA2 pipeline, and when calculating the prevalence using this code:
`prevelancedf = apply(X = otu_table(ps),
MARGIN = 1,
…
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Hello, I am wondering how can I extract the sequence variant names (named as ASV1, ASV2, ASV3...) together with their sequences from the refseq slot? Is there an easy way to extract the data from the …
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One think that has been requested is to enhance the final_table.tsv file to include (apart from the columns it already includes), the NCBI Taxon ID for each ASV/OTU and the accession number of the seq…
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ffmpeg官方提供的release二进制文件包含一堆在ASV里用不到的组件，实在是太占空间了，特别是在下release时候aws的龟速情况下，编译一份支持mp4 flv avc aac等几个基础功能的ffmpeg能改善体验
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Hello. I have succesfully ran contributional alpha diversity on my data. When I run the beta diversity script, the output generated files are empty. I ran the code using the default contributions outp…
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### Is your feature request related to a specific problem?
One common challenge to memorized secrets (side note, use a password manager!) is that they are likely to be forgotten.
Our login scree…
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**Describe the bug**
In AtomSampleViewerStandalone, opening the CPU Profiler and switching to visualizer causes the AtomSampleViewerStandalone crash.
Note that this issue did not occur on Windows …
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Due to the lack of a specification on that aspect, our processors have no or no uniform way to inform the user whether or not a GPU device is used (or even parameterise which one to prefer). Here's th…
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Hi,
I have been reading the literature regarding this topic, and the video from Pat Schloss showed that sequencing depth is still influencing the estimation in `breakaway`.
[https://www.youtube…