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db-xrefs.yaml use abbreviated forms for the prefixes for these two databases (we retain the expanded form as synonyms)
the expanded form is more standard, e.g.:
https://prefixcommons.org/?q=worm…
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The entry for GO_REF in db-xrefs.yaml states that the generic_url for GO_REF is http://purl.obolibrary.org/obo/go/references/
This doesn't work:
`
NoSuchKey
The specified key does not exist.
…
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@ukemi @vanaukenk would this match what you would do in LEGO?
…
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We need to decide if the inferred annotations derived from Noctua models are adding valuable knowledge to our standard GO annotations.
To do this, it would be very helpful to know what GO terms are…
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In pathway [R-HSA-983189 (Kinesins - imported from: Reactome)](http://noctua-dev.berkeleybop.org/editor/graph/gomodel:R-HSA-983189?), the GPAD export produces only one annotation line and it's kind of…
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Dear WebGestaltR authors,
I noticed that when I run the same analysis with the online app and the R package, I don't get the same "job summary" output, for the "entrez ID to functional categories"…
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Currently using this file: https://fms.alliancegenome.org/download/GENECROSSREFERENCE_COMBINED.tsv.gz (undocumented download file) from the Alliance to map HGNC -> UniProtKB ids and vice versa.
I…
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A- Any term which has ISS annotations but no EXP annotation (to term OR descendant)
Suggested by @cmungall in
https://github.com/geneontology/go-ontology/issues/17435
B- We have also histo…
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Over time, the original gulp build pipeline for noctua apps has accumulated a lot of cruft and special cases. We need to revisit the build pipeline, simplifying where we can (less/sass, asset location…
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We want to hard fail if a source contains less than the number of expected genes or proteins