geneontology annotation_extensions issues

geneontology / annotation_extensions

Documentation, tickets & usage reports for annotation extension relations.

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issues

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Annotation of indirect effects that are not part of a normal process or its regulation

#76 ValWood opened 7 years ago
2
Q how to annotate regulation upstream within a process

#75 ValWood opened 7 years ago
3
Can has_(direct)_input use SO identifiers?

#74 rachhuntley opened 7 years ago
0
Add missing usage statements for priority AEs

#73 dosumis opened 8 years ago
3
Make relation labels visible in Protein2GO & QiickGO AR relations browser

#72 dosumis opened 8 years ago
0
Constraints on part of

#71 dosumis opened 8 years ago
2
Can we use "directly inhibits" and "directly activates" in extensions?

#70 dosumis closed 7 years ago
44
expansion of annotation domain for 'regulates-o-occurs-in' (expand to regulation of MF)

#69 rebeccafoulger closed 8 years ago
1
results_in_division_of VERSUS acts_on_population_of

#68 rebeccafoulger opened 8 years ago
0
Missing GOC documentation for some relations

#67 ghost closed 8 years ago
4
has_agent to allow PR identifiers

#66 rachhuntley opened 8 years ago
0
gene product/transcript/gene ID decision?

#65 RLovering opened 8 years ago
3
conflicting SP:KW UniProtKB-KW:KW-0336 & KW:KW-0812

#64 ValWood closed 8 years ago
2
Why are 'regulates' relations not allowed in annotation extensions

#63 dosumis opened 8 years ago
36
New local range for stabilizes

#62 rachhuntley opened 8 years ago
14
Relation to specify cell types for "cell-cell" terms

#61 rachhuntley closed 8 years ago
10
New local range for transports_or_maintains_localization_of

#60 rachhuntley closed 8 years ago
9
Retrofit multi-species annotations to fit new annotation system

#59 dosumis opened 9 years ago
1
Agree OWL translation for taxon extensions

#58 dosumis opened 9 years ago
0
Add support for relating taxons in protein2GO

#57 dosumis opened 9 years ago
0
Add a new 'qualifier' - located_in (to be interpreted as GP to CC relationship)

#56 dosumis opened 9 years ago
0
Making multi-organism annotation a reality

#55 dosumis closed 9 years ago
1
Annotation relations and qualifiers

#54 dosumis opened 9 years ago
1
Investigate changing name exists_during to 'during'

#53 rachhuntley opened 9 years ago
1
Possible protein2GO plugin to show folding.

#52 dosumis opened 9 years ago
5
inconsistency in relations

#51 dosumis opened 9 years ago
6
causually upstream of page missing

#50 RLovering closed 9 years ago
5
secreted_from or secreted_by relationship

#49 RLovering closed 5 years ago
9
Extension relation for origin cell of component

#48 rachhuntley opened 9 years ago
7
Urgent - occurs_in local domain

#47 rachhuntley closed 9 years ago
3
Cleanup and document gorel relations pipeline

#46 dosumis opened 9 years ago
1
Use of developmental relations with CC as target.

#45 dosumis opened 9 years ago
0
results_in_formation_of - definition

#44 rachhuntley closed 9 years ago
1
results_in_division_of - definition

#43 rachhuntley opened 9 years ago
5
regulates_o_results_in_development_of - domain

#42 rachhuntley opened 9 years ago
1
regulates_o_occurs_in

#41 rachhuntley closed 9 years ago
1
regulates_o_has_participant

#40 rachhuntley opened 9 years ago
0
regulates_o_has_input

#39 rachhuntley opened 9 years ago
0
regulates_o_has_agent

#38 rachhuntley opened 9 years ago
0
Add gorel.obo slims to repo

#37 dosumis opened 9 years ago
4
has_direct_input

#36 rachhuntley opened 9 years ago
0
happens_during definition

#35 rachhuntley opened 9 years ago
0
results_in_movement_of - change of range

#34 RLovering closed 5 years ago
2
exists_during definition

#33 rachhuntley opened 9 years ago
0
regulates_o_results_in_morphogenesis_of

#32 RLovering closed 9 years ago
1
regulates_o_results_in_division_of - subsets required

#31 RLovering closed 5 years ago
0
regulates_o_results_in_maturation_of - subsets required

#30 RLovering closed 5 years ago
1
regulates_o_results_in_formation_of - subsets required

#29 RLovering closed 5 years ago
0
Relation definitions meeting

#28 dosumis opened 9 years ago
0
acts_on_population_of - usage and definition

#27 rachhuntley opened 9 years ago
3