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Hi!
I am trying to map my snRNAseq data to Hypomap, but when I run either `predict_query ` or `map_new_seurat_hypoMap`, I got the following error message:
```
Normalizing data
Matrix for annda…
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![image (10)](https://user-images.githubusercontent.com/25906087/72300922-09d19080-361a-11ea-8834-0cdc35b7b367.png)
The PCs are no longer in order after upgrading to v.1.4.5.post1
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**Snakemake version**
6.10.0
**Describe the bug**
It seems directive conda doesn't play well with script, at least when the script is python.
**Logs**
Logs redundant with example output
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- [x] Additional function parameters / changed functionality / changed defaults?
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Hi scanpy team
Thank you for the excellent package! I would like to request a new `legend_loc` paramet…
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- [x] Additional function parameters / changed functionality / changed defaults?
- [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
- [ ] New plotti…
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Hi
I have a problem with reproducing my analysis using scanpy 1.4.3. I have used two different machines using the same software version (all dependencies as well), and I keep having different resul…
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it looks like all of my curated views using the static tsne option can no longer handle continuous variables for the colorized legend. i can get categoricals to work fine, but not anything numeric/con…
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Hi developer,
I installed CAME with guide and try test pipeline like this
import came
if __name__ == '__main__':
came.__test1__(6, batch_size=2048)
came.__test2__(6, batch_size=None)
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**Describe the bug**
Unable to install using pip on M1 mac (Tessa and @stefanpeidli)
**To Reproduce**
`mamba create -n pertpy_env python=3.9
conda activate pertpy_env
pip install pertpy`
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
xguse updated
3 years ago