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pertpy
Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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Update docs
#630
wxicu
opened
2 days ago
0
FindConservedMarkers implementaion
#629
SNOL2
opened
4 days ago
1
More/better guide assignment methods
#628
Zethson
opened
1 week ago
0
Add hagai dataloader
#627
Zethson
closed
2 weeks ago
0
Add Hagai dataset loader
#626
Zethson
closed
2 weeks ago
0
Metadata GDSC annotation improvements
#625
Lilly-May
closed
2 weeks ago
3
test_drug_dgidb - KeyError: 'drug_claim_name'
#624
Zethson
opened
2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate
#623
pre-commit-ci[bot]
closed
3 weeks ago
0
Fix volcano plot y-axis being cut-off
#622
pakiessling
closed
3 weeks ago
1
Fixing incorrect y-axis in volcano plot
#621
pakiessling
closed
3 weeks ago
1
Add more informative error if not every cell type is represented in e…
#620
Zethson
closed
3 weeks ago
0
Add typehints_defaults
#619
Zethson
closed
3 weeks ago
0
Switch from ete3 to ete4
#618
dengzq1234
opened
3 weeks ago
5
Error while using ms.mixscape - ValueError: Input X contains NaN.
#617
VittoriaDBocchi
opened
4 weeks ago
4
[pre-commit.ci] pre-commit autoupdate
#616
pre-commit-ci[bot]
closed
4 weeks ago
0
Improve DE tutorial
#615
grst
opened
1 month ago
1
Add linear mixed effects model to DE interface
#614
grst
opened
1 month ago
0
Parallelize DE methods that support it
#613
grst
opened
1 month ago
0
Add diagnostic output for `model.cond`
#612
grst
opened
1 month ago
0
HTML widget for DE Model classes
#611
grst
opened
1 month ago
0
Extend PyDESeq2 class to support arbitrary contrasts and designs
#610
grst
opened
1 month ago
0
Add metadata notebook
#609
Zethson
closed
1 month ago
0
Add two distance metrics, three-way comparison and bootstrapping
#608
wxicu
closed
2 days ago
4
Add multicondition analysis (differential gene expression interface)
#607
Zethson
closed
1 month ago
0
Check whether perturbation space metrics are available in the public API
#606
Zethson
closed
3 weeks ago
1
OverflowError: cannot convert float infinity to integer with ms.perturbation_signature Method in Mixscape
#605
Zethson
closed
3 weeks ago
2
Distance Metrics Enhancement: New metrics, 3-way-comparisons, Bootstrapping
#603
eroell
closed
2 days ago
0
Add zhang 2021 dataloader
#602
Zethson
closed
1 month ago
0
Speed up tests
#601
Zethson
closed
1 month ago
0
How to use Pertpy after subsetting the cell types?
#600
mainharryHR
closed
1 month ago
4
Speed up tests
#599
Zethson
closed
1 month ago
0
How to plot the 0 value during different comparisons?
#598
mainharryHR
opened
1 month ago
11
scCODA convergence issue for continous covairables
#597
Marwansha
opened
1 month ago
2
Fix from_scanpy
#596
Zethson
closed
1 month ago
1
Can't import pertpy owing to NameError!!!
#595
kakkboy
closed
1 month ago
6
[pre-commit.ci] pre-commit autoupdate
#594
pre-commit-ci[bot]
closed
1 month ago
0
Unable to import pertpy due to SymPy error
#593
dmj6288
closed
1 month ago
4
scgen test broken
#592
Zethson
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#591
pre-commit-ci[bot]
closed
1 month ago
0
Add file lock during downloading
#590
wxicu
closed
1 month ago
1
Weird behavior of Sccoda
#589
ngvananh2508
closed
1 month ago
22
Use __all__
#588
Zethson
closed
1 month ago
1
Expression prediction tutorial
#587
Zethson
opened
1 month ago
1
Use lamin logger
#586
Zethson
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#585
pre-commit-ci[bot]
closed
1 month ago
1
Can not import pertpy
#584
SimonE1220
closed
2 months ago
1
Use __all__ for public interfaces
#583
Zethson
closed
1 month ago
0
`annotate_compounds` for combinations of drugs
#582
MUCDK
opened
2 months ago
2
[pre-commit.ci] pre-commit autoupdate
#581
pre-commit-ci[bot]
closed
2 months ago
0
Augur sklearn warning
#580
namsaraeva
closed
2 months ago
3
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