scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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Add linear mixed effects model to DE interface #614

Open grst opened 1 month ago

grst commented 1 month ago

Description of feature

Description of feature

They can be used to either perform tests on all cells, including the sample as random effect, or on pseudobulk when there are designs that require random effects.

Methods

Model specification

Migrated from https://github.com/scverse/multi-condition-comparisions/issues/20