scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
92 stars 19 forks source link

Use lamin logger #586

Closed Zethson closed 2 months ago

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 30.33708% with 62 lines in your changes are missing coverage. Please review.

Project coverage is 62.19%. Comparing base (05a6a5c) to head (1d39ba9). Report is 2 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #586 +/- ## ========================================== - Coverage 62.19% 62.19% -0.01% ========================================== Files 43 43 Lines 5303 5295 -8 ========================================== - Hits 3298 3293 -5 + Misses 2005 2002 -3 ``` | [Files](https://app.codecov.io/gh/theislab/pertpy/pull/586?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab) | Coverage Δ | | |---|---|---| | [pertpy/\_\_init\_\_.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [pertpy/data/\_dataloader.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Fdata%2F_dataloader.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L2RhdGEvX2RhdGFsb2FkZXIucHk=) | `100.00% <100.00%> (ø)` | | | [pertpy/metadata/\_drug.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Fmetadata%2F_drug.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L21ldGFkYXRhL19kcnVnLnB5) | `83.63% <ø> (-0.58%)` | :arrow_down: | | [pertpy/metadata/\_metadata.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Fmetadata%2F_metadata.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L21ldGFkYXRhL19tZXRhZGF0YS5weQ==) | `60.86% <100.00%> (+1.77%)` | :arrow_up: | | [pertpy/metadata/\_moa.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Fmetadata%2F_moa.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L21ldGFkYXRhL19tb2EucHk=) | `76.74% <ø> (-1.04%)` | :arrow_down: | | [pertpy/tools/\_distances/\_distance\_tests.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Ftools%2F_distances%2F_distance_tests.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19kaXN0YW5jZXMvX2Rpc3RhbmNlX3Rlc3RzLnB5) | `93.96% <ø> (ø)` | | | [pertpy/tools/\_kernel\_pca.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Ftools%2F_kernel_pca.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19rZXJuZWxfcGNhLnB5) | `0.00% <ø> (ø)` | | | [pertpy/tools/\_perturbation\_space/\_clustering.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Ftools%2F_perturbation_space%2F_clustering.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19wZXJ0dXJiYXRpb25fc3BhY2UvX2NsdXN0ZXJpbmcucHk=) | `97.43% <100.00%> (+0.06%)` | :arrow_up: | | [.../\_perturbation\_space/\_discriminator\_classifiers.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Ftools%2F_perturbation_space%2F_discriminator_classifiers.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19wZXJ0dXJiYXRpb25fc3BhY2UvX2Rpc2NyaW1pbmF0b3JfY2xhc3NpZmllcnMucHk=) | `89.26% <ø> (-0.06%)` | :arrow_down: | | [...y/tools/\_perturbation\_space/\_perturbation\_space.py](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree&filepath=pertpy%2Ftools%2F_perturbation_space%2F_perturbation_space.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19wZXJ0dXJiYXRpb25fc3BhY2UvX3BlcnR1cmJhdGlvbl9zcGFjZS5weQ==) | `86.59% <100.00%> (+0.06%)` | :arrow_up: | | ... and [10 more](https://app.codecov.io/gh/theislab/pertpy/pull/586?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab) | |