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scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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Can not import pertpy #584

Closed SimonE1220 closed 2 months ago

SimonE1220 commented 2 months ago

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If i import the pertpy, this error appears

ImportError Traceback (most recent call last) in <cell line: 1>() ----> 1 import pertpy as pt 2 import scanpy as sc

3 frames /usr/local/lib/python3.10/dist-packages/pertpy/tools/_coda/_sccoda.py in 10 from anndata import AnnData 11 from jax import random ---> 12 from jax.config import config 13 from mudata import MuData 14 from numpyro.infer import Predictive

ImportError: cannot import name 'config' from 'jax.config' (/usr/local/lib/python3.10/dist-packages/jax/config.py)

Version information

No response

Zethson commented 2 months ago

You can install from main where this is fixed . We'll make a new release this weekend! Sorry for the inconvenience...

Apr 12, 2024 4:09:55 PM SimonE1220 @.***>:

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If i import the pertpy, this error appears

ImportError Traceback (most recent call last) in <cell line: 1>() ----> 1 import pertpy as pt 2 import scanpy as sc

3 frames /usr/local/lib/python3.10/dist-packages/pertpy/tools/_coda/_sccoda.py[https://localhost:8080/#] in 10 from anndata import AnnData 11 from jax import random ---> 12 from jax.config import config 13 from mudata import MuData 14 from numpyro.infer import Predictive

ImportError: cannot import name 'config' from 'jax.config' (/usr/local/lib/python3.10/dist-packages/jax/config.py)

Version information

/No response/

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