Extend PyDESeq2 class to support arbitrary contrasts and designs - Githubissues

scverse / pertpy

Perturbation Analysis in the scverse ecosystem.

https://pertpy.readthedocs.io/en/latest/

MIT License

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Extend PyDESeq2 class to support arbitrary contrasts and designs #610

Open grst opened 1 month ago

grst commented 1 month ago

Description of feature

Blocked by https://github.com/owkin/PyDESeq2/issues/213

See also https://github.com/theislab/pertpy/blob/2cc7ff77695cb616bb3ab207b5e506c0880aadb1/pertpy/tools/_differential_gene_expression/_pydeseq2.py#L62-L69

Migrated from https://github.com/scverse/multi-condition-comparisions/issues/13