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This ticket will discuss the differences between NovoAlign and BWA in terms of the reads MAPQ in alternative sequence set.
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By VirologiaHUCA
Description
Sub-lineage of: XBB.2.3
Earliest sequence: 2023-02-27
Most recent sequence: 2023-03-13
Countries circulating: Spain (5 Asturias)
Written description
In XBB.2.3 v…
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Description
Sub-lineage of:XBB.1.5.20
Earliest sequences:2023-3-24,Canada EPI_ISL_17462154
Latest sequences:2023-4-2,Canada EPI_ISL_17500101/17500102
Countries:Canada(22)
Number of Sequences:22
…
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Click to see the original proposal designated **LF.6**
Previously tracked as Branch 133 **FLiRT** of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
JN.1 > T17859C > T31…
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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
reece updated
2 years ago
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As far I can see, we may avoid the DEBUG trap in version 4.4:
```
PS0
The value of this parameter is expanded (see PROMPTING
below) and displayed by interacti…
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From branch 79 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C6968T+S:F456L
Query: C6968T, T22928C, C18894T
No. of seqs: 30 (Canada 1 China 3 France 1 Singapore 3 Sou…
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Similar to benchmarks created for image classification, we would like to create a benchmark for video datasets.
A few tasks for tackling video datasets:
1. Identify ML training related to video …
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**Description** — transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/695
**Sub-lineage of:** XBB.1.16.15 (XBB.1.16 + S:K147N, S:P521S)
**Earliest sequence:** 2023-7-10,…
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**Description** - Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1618
**Sub-lineage of:** KP.2.3 (S:∆S31, H146Q, R346T, F456L)
**Earliest sequence:** 2024-4-22, Sin…