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https://github.com/UCSF-CBI/c4-ondemand-interactive-apps/blob/main/RStudio/form.yml uses GB i several places, but it should be GiB, which is not the same thing.
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Right now, the one-time password in `RSC_PASSWORD` is exported by default to the `rsession` process via:
```sh
$ grep RSC_ ~/.config/rsc/rsession.env.parent
declare -x RSC_PASSWORD="0NZBNP3jdUqQA…
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Hi,
I am currently trying to use DoubletFinder to identify and remove doublets from rodent scRNA data.
I have two conditions that I'm processing separately but both result in high pK values when I…
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FYI, we need to specify `--nodes=1` to make sure Slurm allocated the job to a single machine. Without it, there's a risk that `--ntasks=n` of spread out across multiple machines.
https://www.c4.ucsf.…
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### Setup (so far)
- Installed latest anaconda to /software/c4/ondemand/software/jupyter_conda
- Allowed conda to conda-ize the .bashrc for the test user.
- Copied the conda specific stuff from .…
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Gist from https://community.rstudio.com/t/setting-parallel-computing-in-rstudio-cloud/133445/4:
```sh
n=$(cat /sys/fs/cgroup/cpu/cpu.cfs_quota_us)
nCPU=$((n / 100000))
```
# Task
* [ ] Add…
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I use relion_convert_to_tiff to convert my EER files to TIFF. The only issue we are seeing is a consistent vertical white line of pixels in all of the TIFFs. The line is not there in the EERs. Has …
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I am trying to sort samples by samples name for `Segmented Copy Number Track` and was following the https://github.com/igvteam/igv.js/wiki/Seg-Track#segmented-copy-number-track link as a guide. but I …
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This validation task stems from https://github.com/UCSF-CBI/c4-ondemand-interactive-apps/issues/2#issuecomment-1023664077.