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With the code below, MemoryFileSystem is taking 10 times longer to write to a file than it takes when switching out with LocalFileSystem.
```
import 'dart:io';
import 'package:file/file.dart' a…
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Dear @sqjin
Hi, I'm a big fan of your program.
However, I have just two questions.
# Q1. Spot diameter
The spot diameter of 10X visium is 55um.
This is the note from 10X genomics.
"…
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Unfortunately, DropEst is unable to work correctly with 10x V3. Should I simply use the new unfiltered barcodes for V3 and what other changes must be made?
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Thanks for creating the tool!
I was trying scAllele on public 10x scRNA data and was able to get the output files (intronic_parts.bed, mi_summary.tab, read_cluster_info.tab and vcf). However, the vcf…
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IMPORTANT
The package could benefit a TON by demonstrating `peco` on a separate 10X dataset. We have plenty available in Bioconductor. Perhaps look in `TENxPBMCData` for something small (~4k cells)…
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I was able to run the 94X branch in 10_0_1 without issues, but after PR https://github.com/CMSDeepFlavour/DeepNTuples/pull/44 , this appears to be no longer possible.
The ntuplizer fails with excep…
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### Describe the bug 💬
This project exported and ran fine in Unity 2023.2.20f1 on iOS running on an iPad Pro - when I updated it to Unity 6000.0.23f1 and also 6000.0.24f1, I noticed the allocated s…
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Hi,
The STAMP is quiet an efficient algorithm to integrate multi samples. But I wonder how to preprocess data. For example, I have four samples generated by 10X Visium, and how can I preprocess the…
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Hello,
I have 2 10X Genomics datasets (BCR and GEX). What are the appropriate parameters setting for TRUST4?
I'm using
f"run-trust4 -1 {f1} -2 {f2} --barcode {f1} --UMI {f1} --readFormat bc:0:15,…
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### Question
Why bytes_on_disk is almost 10x of compressed_size? I suppose it should be almost equal (with respect to some padding)
Below is the result of the query from docs https://clickhouse.co…