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Hi,
I'm a member of the HuBMAP CMU TC team. I'd like to test this great work on 3D Image Mass Cytometry (IMC) images, but I didn't see the manual/instruction as Cellpose has. Would you please walk …
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# Interesting papers
- [Davison 2018 - FutureMapping: The Computational Structure of Spatial AI Systems](https://arxiv.org/abs/1803.11288)
- Imperial College London의 Dyson Robotics Lab 교수님이신 A…
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I find this paper very interesting: "UNetFormer: A Unified Vision Transformer Model and Pre-Training Framework for 3D Medical Image Segmentation". I am trying to reproduce it on Brast.
The paper cl…
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Hello everyone,
I am trying to run this great toolbox on HPC. So i used apptainer to build a sif image from the corresponding docker container (jqmcginnis/lst-ai:latest). Afterwards, i run this sif…
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There are different ways for refining existing masks with `micro_sam`.
The easiest option would be to derive point prompts from the centers of the masks and then prompt the model with these points.…
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I have a custom datasets in 3D, labeled with segmentation and I did ConvertSegToBoundingBoxCoordinates already, so I have a annotation file (.json), contains each image's path, segmentation path and b…
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Goal: We want to use the colliding front to automate the pathline generation process.
The ultimate feature we aim to implement is building a path by setting a starting point and an ending point in a…
jseo0 updated
3 years ago
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python render.py -m --precomputed_mask --target scene --segment
I have saved multiple precomputed_masks, how can I segment these multiple targets at once?
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Hi,
This tool looks great! Are there any plans to support annotating medical images?
Potential applications:
- Segmentation
- Classification (also multi-class)
- ROI in every slice
- ROI in 3D
Use…
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# Description
I would like to push a new dataset `ucsf-gm-psir` to git-annex server.
Is a dataset shared by our UCSF collaborators, contains 110 subjects with:
`anat`: axial PSIR images from…