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```bash
#reproduce script
python ExtractEdges.py --species mouse --emFile toy.sc.em.txt --annFile toy.sc.ann.txt --interDB lrc2p --coreNum 4 --out example
python VisInteractions.py --sourceFolder …
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[@dosumis this ticket makes points that you have been making for a decade, apologies if this duplicates an existing ticket, I didn't see one and thought to start one fresh]
In general CL follows se…
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@flying-sheep
Just found this issue for pandas https://github.com/pandas-dev/pandas/issues/21653, and looked at the code for `is_string_dtype` and think it probably shouldn't be relied on. Anythin…
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Hello CL Team,
This issue is related to issue #838 , please let me know if I misunderstand something here, thank you very much in advance
https://www.frontiersin.org/articles/10.3389/fimmu.2019.…
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Some questions
* Will FACS sorting disturb RNA?
* How should we preserve the cells post-sorting and pre-RNA isolation?
* How should we isolate RNA?
* What markers should we sort on?
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Hello, I encoutered a warning today with this code
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq.to_df().T,
ppi_data=lr_pai…
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PathGO has terms that describe proinflammatory processes at the cellular level:
1. PATHGO_0000005 (non-specific T cell activation factor)
2. PATHGO_0000010 (mediates non-specific T-cell activation…
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This is a first attempt at deriving a data format specification.
Once we figure out some of the APIs, we could include these in our config.vsh.yaml definitions (similar to https://github.com/openpr…
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I need to add new terms that compose 2 uberon terms in a single term name in the development tree of GO.
I need to add midbrain neuron development and hindbrain neuron development.
The template ne…
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Hello,
I have pulled the Docker Image and try to use the tool to characterize T cell receptor sequences in single-cell RNAseq data. It works fine on human data but for mouse samples I’m getting thi…