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Hello,
I hope you would be able to help me with the following issue. This work is done on Galaxy EU server.
I created an initial blob directory with an assembled genome and the last NCBI taxdump…
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Hi @DRL
Thanks for making this software, its been very helpful to us in assembling our protist genome and isolating it from bacteria in its environment. My blobtools installation normally works v…
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Potentially change mapper from blast to diamond. Blast step in blobtools is prohibitively slow for large genomes. An alternative would be to use a reduced database. Need to search for an "nt-lite" lik…
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I run
```
fasta_file=/path/to/scaffolds.fasta
out_dir=../out_dir
blobtools create \
--fasta $fasta_file \
$out_dir
```
but report:
> Traceback (most recent call last):
> File "/Softw…
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I am successfully running the test data set, but the pipeline stops at Error in rule run_report.
I am executing the command
`culebrONT run_cluster --config /lustre/projects/dazzlerAssembly/test_cule…
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Hello. Just tried this on an intel cpu mac:
```
conda clean --all -y
conda create -n btk2 -c conda-forge python=3.9 -y
conda activate btk2
pip install "blobtoolkit[full]"
```
and got this:
```…
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When I try to add tiara categories to BTK
`blobtools add \
--text /jic/scratch/groups/Saskia-Hogenhout/tom_heaven/Psyllidae/assembly/genome/T_urticae/hifiasm_19.5/715m/12/2/3.0/0.5/tiara/T_urt…
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Hi I am trying to install on intel cpu Mac and get the following error
```
Building wheels for collected packages: blobtk
Building wheel for blobtk (pyproject.toml) ... error
error: subproces…
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Hi,
I'm trying to run blobtoolkit from the docker file, and I'm running into some issues while following the README to get the package up and running.
I ran the pull command (docker pull genomeh…
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Hello there,
I have installed the entire BlobTools2 a while ago, but I keep running into issues while trying to run the snakemake pipeline, so I decided to try out docker. The staff at my instituti…