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Hi, would it be possible to generate the input CpG file for mouse GRCm38 and make it available somewhere?
Alternatively, if there is a recipe for the creation of the bed file from the reference fasta…
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Would it be possible to include the necessary code/binaries in the methylQA repo that would allow one to create the cpg.bed and genome.chrsizes.tsv input files needed to run methylqa bismark mode? Som…
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When running the analyses, e.g. with the methylglm function, the _cpg.pval_ vector should contain raw p-values from calling significant DMPs or the adjusted p-values?
BTW, can the results table con…
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Hi,
Thanks for developing such a useful tool.
It seems the software so only report the CpG methylation at the positive strand, may I ask how to also get the methylated CpGs at the opposite strand?…
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**Describe the bug**
When a sink point is a function that doesn't provide any return information, it's not feasible to derive the path leading to the vulnerability.
**To Reproduce**
When the sink…
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Decide how to handle the `async` Python stuff. Currently, this is mostly "not supported" and yields a `ProblemNode`.
Ideas:
- these are basically the same as the non-async stuff -> make them inherit…
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您好,我正在尝试对一些变异(增强)数据进行CPG的构造,我发现经常出现编译不通过的情况,如下图所示:
![image](https://user-images.githubusercontent.com/72129157/225314169-b59388d1-1ec3-4b81-806b-dffe333e571a.png)
我想请问是否能跳过这一warning,使得能够对数据集中的代码进行构图…
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Hi,
I have a data set including samples analyzed by both 'EPICv2' or 'EPICv1' arrays (10 out of 16 samples are epicv2). While running the package I got the following error showing samples should be …
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I installed using pip3. I am trying to run the CpG_aggregation.py test. I downloaded the test files, and am now running `CpG_aggregation.py -b hg19.RefSeq.union.1Kpromoter.bed.gz -i test_03_RRBS.bed …
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For Day 10 bedgraphs..
http://owl.fish.washington.edu/scaphapoda/Sean/Geoduck_Analysis/Day10_bedgraphs/
Why are line number different if loci are common?
![see](http://eagle.fish.washington.edu…
sr320 updated
7 years ago