Day 10 CpG Methylation File Clarification - Githubissues

hputnam / project_juvenile_geoduck_OA

This repository provides data and scripts to analyze the influence of ocean acidification on juvenile geoduck DNA methylation and phenotype.

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Day 10 CpG Methylation File Clarification #18

Open sr320 opened 7 years ago

sr320 commented 7 years ago

For Day 10 bedgraphs.. http://owl.fish.washington.edu/scaphapoda/Sean/Geoduck_Analysis/Day10_bedgraphs/

Why are line number different if loci are common?

see

sr320 commented 7 years ago

via Sean

wrong files new ones ...

http://owl.fish.washington.edu/scaphapoda/Sean/Geoduck_Analysis/Day10_bedgraphs_complete_cases/

sr320 commented 7 years ago

Can these be modified to cover C instead of G ?

sr320 commented 7 years ago

Actually this might be correct

There is something about the strandedness I cannot wrap my head around..

sr320 commented 7 years ago

Also, is there a coverage limitation placed on these?