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`cwltool --validate` accidentally accepts CWL documents in which `default` value is mismatched with the type specified in `type` field.
Is this a bug of `cwltool` or are there any descriptions in the…
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## Expected Behavior
Using the instructions in the README, developers should be able to run tox locally without errors.
## Actual Behavior
During the installation process, some autogenerated nati…
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Hello,
I having the weaver in ems configurated and running using docker compose.
When I triying execute some job, for this case "file2string_array", catch the next error:
'/opt/local/src/weav…
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Our PGAPX tool (ncbi/pgap on GitHub) uses cwltool as a CWL runner. We noticed that around 1st of June this year or TeamCity builds are running 5-7 minutes longer.
We tracked the issue to slow down …
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When running parallel from cwltool after running multiple instances of IPS the tmp remains with all leftovers of the data required for the analyses.
Adjusting the parameters to:
+protein_chunk_s…
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```
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
requirements:
InlineJavascriptRequirement: {}
InitialWorkDirRequirement:
listing:
- class: Directory
…
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Hi all,
I'm working on the use case described in https://github.com/ResearchObject/ro-crate/issues/20
Basically I want to wrap a reference workflow obtained from a Galaxy instance so the main file…
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I am proposing an additional conformance test to be added to the Jenkins suite and applied to various CWL runners (this github repo seems to be the. The following example succeeds in the reference run…
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works in `cwltool` version 1.0.20181217162649 but not version 1.0.20190228155703
```
$ cwltool --pack https://raw.githubusercontent.com/NCI-GDC/gdc-dnaseq-cwl/3cb464a3a5c39cc060cd23d9c60918bc9ffb1…
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I often import cwltool as a python package and run it as a python script.
Here's an example:
```
from cwltool.main import run as run_cwltool
run_cwltool(
[wf_file_path]
stdout=stdo…