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emo-bon
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MetaGOflow
MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
https://metagoflow.readthedocs.io
Apache License 2.0
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FATAL: ... error fetching image to cache: failed to get checksum for docker://docker://
#51
cymon
opened
1 month ago
3
run_wf.sh | $KEEP_TMP | -b
#50
cymon
opened
2 months ago
0
Updating functional annotation software
#49
cymon
closed
3 months ago
1
Update of functional annotation software
#48
cymon
closed
3 months ago
2
Hmmsearch has hard-coded 4 threads per chunk analysis
#47
cymon
closed
7 months ago
2
Update conda env
#46
loraine-gueguen
opened
11 months ago
1
MetaGOflow v1.0 fails to run because of incompatible Prosite binary in IPS 5.57-90.0
#45
cymon
opened
1 year ago
2
adds few suggestions to readthedocs
#44
jprmachado
closed
1 year ago
0
I've added a conda env file with the deps and corresponding docs.
#43
mberacochea
closed
1 year ago
0
Building the rocrate should not be reliant on the root filesystem
#42
cymon
opened
1 year ago
0
interactive report
#41
hariszaf
opened
1 year ago
0
Update README.md
#40
hariszaf
closed
1 year ago
1
improve output files metadata in the ro-crate
#39
hariszaf
opened
1 year ago
4
fix logical expression to keep tmp
#38
hariszaf
closed
1 year ago
0
eggnog summary
#37
hariszaf
closed
1 year ago
0
eggNOG output is not returned
#36
hariszaf
closed
1 year ago
1
Escape building ro crate if error occurs
#35
hariszaf
closed
1 year ago
0
fix contact mail to rocrate #31
#34
hariszaf
closed
1 year ago
0
remove ena data from rocrate #32
#33
hariszaf
closed
1 year ago
0
remove raw data from ro-crate in case ENA fetch tool is used
#32
hariszaf
closed
1 year ago
0
contact mail not working
#31
hariszaf
closed
1 year ago
1
fix path for rfam models #29
#30
hariszaf
closed
1 year ago
0
wrong export path for rfam models
#29
hariszaf
closed
1 year ago
0
RO-crate, optimisations and documentation
#28
hariszaf
closed
1 year ago
0
Ro crate for the metaGOflow output
#27
hariszaf
closed
1 year ago
2
change running scripts structure
#26
jprmachado
opened
1 year ago
2
Split scripts
#25
jprmachado
closed
1 year ago
1
refactoring and improve description of running the workflow and envir…
#24
jprmachado
closed
1 year ago
5
diamond CPU overload
#23
hariszaf
opened
1 year ago
2
small changes readme
#22
jprmachado
closed
1 year ago
1
Schemas source change
#21
jprmachado
closed
1 year ago
3
adds interproscan fine tune (rebuild branch)
#20
jprmachado
closed
1 year ago
0
disables other_ncrnas subworkflow
#19
jprmachado
closed
1 year ago
1
build ro-crate for wf outcome
#18
hariszaf
closed
1 year ago
2
Validation of wf syntax on push
#17
jprmachado
closed
1 year ago
1
Multiple tmp/data folders
#16
jprmachado
opened
1 year ago
1
syntax change docker pull
#15
jprmachado
closed
1 year ago
1
add descriptions of vars provided by the user
#14
hariszaf
closed
1 year ago
9
Revert "adds new dataset for quick runs"
#13
jprmachado
closed
1 year ago
1
adds new dataset for quick runs
#12
jprmachado
closed
1 year ago
1
Small test input
#11
jprmachado
closed
1 year ago
1
Chunked results should be concatenated at end of execution
#10
cymon
closed
7 months ago
1
interproscan cpus fine tuning
#9
jprmachado
closed
1 year ago
1
Develop
#8
hariszaf
closed
1 year ago
0
Interproscan overflow of cpu
#7
jprmachado
closed
1 year ago
1
Database integrity: checking md5sums
#6
cymon
opened
1 year ago
1
Installation/download.sh script fails
#5
cymon
closed
1 year ago
6
Hamap under IPS not working
#4
hariszaf
closed
1 year ago
1
update readme
#3
cpavloud
closed
1 year ago
1
include diamond taxonomy assingment
#2
hariszaf
opened
2 years ago
0
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