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The links after the subheading "Enhancer-Gene Prediction Target Genes: " do not lead to valid gene pages
e.g. https://catalog.igvf.org/rs1250566?sub=4674b28efb10e477977543d82a87a45b37ed2eff49f66861ba…
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**Describe the bug**
Hello, I'm trying to run SCENIC+ using SnakeMake in a linux machine (centos 9), on the tutorial dataset.
I ran scATAC-seq preprocessing in python (using pycistopic, using the tu…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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Hello,
I am experiencing an issue while running the SvAnna CLI tool. I receive the following error message when executing the command:
ERROR o.m.svanna.cli.cmd.PrioritizeCommand - Error: Error rea…
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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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- [ ] Finish molQTL plotting scripts and plot coverage data for bunch of Colocalized QTL effects
- [ ] Add more GWAS. Need to edit some scripts to accommodate binary outcomes for some gwas... see (…
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PathGO has terms that describe proinflammatory processes at the cellular level:
1. PATHGO_0000005 (non-specific T cell activation factor)
2. PATHGO_0000010 (mediates non-specific T-cell activation…
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The attached file does not sort properly by chromosome start and stop:
[tf_locus.bed.gz](https://github.com/biocore-ntnu/pyranges/files/7018207/tf_locus.bed.gz)
```
>>> import pyranges
>>> dat…
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Hi,
I am kind of new. I installed cat on slurm as per github instructions and added all dependencies either through anaconda or manually installed and provided the path.
The code I used for test r…
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Please provide as much information as you can:
* **Suggested term label:**
histone H3-K27 methyltransferase activator activity
* **Definition (free text)**
def: "Binds to and increases the …