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Hello,
I was trying to run BiG-SCAPE for some antiSMASH runs but the index.html file is blank. This is my run output.
- - Processing input files - -
Including files with one or more of the f…
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Dear Sam,
I'm using ggCaller v1.3.4, which I have installed using Conda (Docker is not available on the Linux cluster I'm using). I tested ggCaller with 10 Mtb genome assemblies I built using the c…
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I am trying to create a PPanGGOLiN pangenome using annotations from another source. I have gff3 files and matched fasta. I am running version ppanggolin 2.0.2. I used this command: `ppanggolin annota…
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# **This issue post is for prosperity and has already been reported.**
I have been using Panaroo for a while now but I am currently trying to take the DNA/Protein sequences reported in the combin…
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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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Hi,
I trying to analysis a single species using WGD V2. In the species delineation step, I am sure how to generate the families file that I need in the Ks step. I tried all relevant wgd dmd options, …
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Hi, i'm using interproscan for functional annotation of new yeast strain.
However, it works and stops repeatedly with an error "ERROR - Command line failed with exit code: 139".
Please help me t…
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RUN:
```
(base) [zhutao@log1 interproscan-5.52-86.0]$ ./interproscan.sh -dp -f tsv -goterms -i test_single_protein.fasta
```
Result
```
10/09/2021 12:44:22:865 Welcome to InterProScan-5.52-8…
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Dear
I updated ppanggolin to its newest version (2.0.1) today. I wanted to re-analyse my genomes but I allways get a clustering error.
This is what happens:
ppanggolin all --anno input_gff.cs…