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bacpop
/
ggCaller
Bifrost graph gene caller.
MIT License
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Enables reading of gzipped files
#38
samhorsfield96
closed
1 month ago
0
Update python-package-conda.yml
#37
samhorsfield96
closed
1 month ago
0
Addresses issue #35
#36
samhorsfield96
closed
1 month ago
0
ggcaller terminate called after throwing an instance of 'std::out_of_range'
#35
afrouin
closed
1 month ago
4
Updates singularity docs
#34
samhorsfield96
closed
2 months ago
0
Updates docs and prevents warning message with biopython
#33
samhorsfield96
closed
2 months ago
0
TypeError: set_axis() got an unexpected keyword argument 'copy' during execution
#32
tgttunstall
closed
2 months ago
8
Docker
#31
samhorsfield96
closed
2 months ago
3
Smaller core genome with less stringent identity cut-off
#30
conmeehan
closed
2 months ago
3
Update generate_network.py
#29
samhorsfield96
closed
3 months ago
0
Exception: Diamond search failed!
#28
rderelle
closed
3 months ago
6
Please help with the following error
#27
sim3023
closed
3 months ago
7
interpret the gene_presence_absence.csv
#26
abcdtree
closed
5 months ago
1
Adds checks for removal of ORFs during scoring.
#25
samhorsfield96
closed
5 months ago
2
Docker image not able to run ggCaller
#24
samuelmontgomery
closed
4 months ago
7
Singularity execution problem
#23
sebbruchmann
closed
5 months ago
2
Fix for start codons at start of contig
#22
samhorsfield96
closed
7 months ago
0
Converts FM-index to uppercase to avoid indexing issues.
#21
samhorsfield96
closed
7 months ago
0
Download databases issue
#20
imanyass
closed
7 months ago
8
First gene not annotated if the first base of the gene is the first base of the contig
#19
rgladstone
closed
7 months ago
6
Output gffs empty if input fasta has bases in lowercase
#18
rgladstone
closed
7 months ago
2
Should I avoid including Sccafold in my input data?
#17
HirokiK0
closed
7 months ago
2
python error (probably)
#16
davidmadariaga
closed
9 months ago
4
error handeling : terminate called after throwing an instance of 'std::out_of_range'
#15
aababc1
closed
7 months ago
9
HMMER3
#14
davidmadariaga
closed
9 months ago
3
When using docker images, ggcaller does not work well
#13
HirokiK0
closed
9 months ago
6
No sequences in core_genome_alignment.aln
#12
wanyuac
closed
9 months ago
2
Frameshift mutations
#11
mbhall88
closed
10 months ago
2
[conda installation] ImportError: libmkl_sequential.so.2: undefined symbol
#10
lxsteiner
closed
10 months ago
2
Identifying identical paralogues
#9
samhorsfield96
opened
1 year ago
0
Cmake warnings when installing from source (unclear if they are problematic)
#8
benrhodes26
closed
1 year ago
2
biopython should be pinned at version 1.7.9 to avoid errors when building from source (with mamba)
#7
benrhodes26
closed
1 year ago
4
ImportError: cannot import name 'UnknownSeq' from 'Bio.Seq'
#6
Czirion
closed
1 year ago
4
Documentation for custom annotation databases
#5
dutchscientist
opened
1 year ago
2
Problem with larger dataset?
#4
pangenomics
closed
1 year ago
3
UnicodeDecodeError
#3
samlipworth
closed
1 year ago
5
Error while following tutorial! Please help!
#2
Vladislav-Shevtsov
closed
1 year ago
4
struggling to install
#1
samlipworth
closed
1 year ago
3