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When initally running `gemBS extract`, I do not see any variants in the `_snps.txt.gz` files.
The gemBS config refers to the following Reference and DBSNP:
```
...
reference = ${root}/ref/huma…
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We are using pileup.js for targeted sequencing with high coverage rates (> 1000 reads per position).
When the alignment track is to be displayed at a position with many reads, the browser gets stuck,…
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There are a number of different tools that perform NER on text, from bioportal/zooma through to scispacy, @cthoyt's Gilda ( gilda https://www.biorxiv.org/content/10.1101/2021.09.10.459803v1.full )
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Hi Felix,
it's using bismark to handle the non-directional data, but I don't know how to judge CT/CTOT/CTOB/OB.
Logically, I think :
CT read1 with XR:Z:CT XG:Z:CT and rea…
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Hi all, thanks for the wonderful library!
Unfortunately I think I've found a bug. Files compressed with `bgzip` (block gzip) are failing when trying to use `pako` to do streaming decompression.
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The display of genomes has the DOI repeated for each genome from a paper.
![Screenshot 2024-05-29 at 9 38 27 AM](https://github.com/soybase/jekyll-soybase/assets/14073707/699a0c00-283d-4250-91c8-a9…
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In an attempt to set up a uniform set of quality control checks across OBO ontologies, we noticed that GAZ is currently inconsistent. Due to its size, its a bit hard to determine run the reasoner in p…
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_WARNING: long post below. I'm hoping to help us build a shared conceptual framework to guide ongoing API design, and given the underlying complexity and the number of different priors, don't know how…
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When choosing Human (GRCh38/hg38) or Human (hg38 1kg/GATK), the chrM does not display RefGene-related information. Only NC_012920 has gene information.
![1](https://github.com/igvteam/igv/assets/10…
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### Make sure that your issue is reproducible by doing the following tasks
- [X] I am using application packages whose source code is not optimized for production (source code is not minified).
- …