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Somehow the simulators database lost new versions of tools, and instead has old versions. Perhaps this is due to recent issues with the deployment, where we were unintentionally using a different Mong…
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---
id: gillespy2
version: 1.6.4
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/d638c53346298a9747cbcd02145eed47395e8f4c/biosimulators.json
specificationsPa…
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Good day.
I hope you are all doing?
Good day.
Based on a previous issue( #537) that involves the use of the Gillespie algorithm to simulate the stochastic trajectory of the polymerization of styr…
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The test for the combine service can take a very long time. Nx considers any package updates to require testing all apps. Since the python app does not need to be tested as often we can create a separ…
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---
id: gillespy2
version: 1.6.4
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/12d459c0d7ba21ac5ec66ab8ff63e621ad74c2d3/biosimulators.json
specificationsPa…
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```
Compiling Solver. Build dir: /var/folders/nf/3stvfv_d2m16_v3p14l17rmm0000gn/T/spatialpy_build_a4whfber
Creating propensity file /var/folders/nf/3stvfv_d2m16_v3p14l17rmm0000gn/T/spatialpy_build_…
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Good day, I am working on comparing the deterministic and stochastic trajectories of the polymerization of styrene in free radical reaction. I find it challenging to use the module. Attached is a sche…
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Species_name="C" will cause compile errors due to the use of
```
#define C x[0]
```
Change to expression code from GillesPy2
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## Oregonator Error
```
Error encountered during execution of Makefile target: 'ode'.
Return code: 2- stdout: make: Entering directory '/opt/conda/lib/python3.8/site-packages/gillespy2/solvers/cpp/…