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---
Name: GTFS to Beckn Converter
Title: "Need a User Interface for Managing GTFS files."
Labels: C4GT Community
---
## Description
Problem
Today any mobility service that has its sched…
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When I run this on a small bed file I get the following error:
> [Task submitter] ERROR nextflow.processor.TaskProcessor - Error executing process > 'EXTRACT_GTF_TRANSCRIPTS'
>
> Caused by:
> …
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### The problem
Trying to set up the gtfs integration for the first time, but it doesn't seems to be able to pass the initialization phase due to timeout and throws the following error:
```
2024-…
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Hello,
When I compared single `merged.stringtie.assembly.gtf` (generated by stringtie merge function) file with known annotation gtf file, I found each line in .tracking has zero value in ||…
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Hi,
I was running braker3 with etp mode, and get the final braker.gtf file. Compared to the Augustus/augustus.hints.gtf which predicted 68857 genes, the final braker.gtf preserved only 39896 genes.…
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Hello,
I am trying to run the command that prepares the protein fasta as follows:
k8 pangene.js getaa gene-anno.gtf protein-seq.faa > proteins.faa
And I am getting an empty proteins.faa and the…
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I have been struggling with gtfs-to-html and gtfs-to-geojson for a couple of days. After no success getting it working on my existing project and creating some new remix projects I was not able to get…
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Hello,
I am working with bulk RNA seq data. I created a reference like shown below:
`kallisto index -i mouse_version111cdna Mus_musculus.GRCm39.cdna.all.fa.gz`
Then I created a t2g file using…
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Hello @giovanniquinones,
I have been trying isoLASER out but I'm failing to generate the output pickle files from:
`isolaser_extract_exonic_parts -g {annot.gtf} -o {transcript.db}`
For the ann…