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Related to the clinical quality measures there are a lot of scenarios where clinicians may want to set a status for a patient (satisfied, excluded, etc.) based on clinical information that is availabl…
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At the end of section 1.1.2, the same question is asked to the reader twice.
_If an individual is at a higher risk for having HIV than a randomly sampled person from the population considered, how,…
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I'm finding that I get different results when I take some of the same sequences that were input into HIV-TRACE and input them into MicrobeTrace: I get fewer links between nodes, which appears to refle…
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Hello! Can I get an idea on how to solve the PairID error that I keep getting in. See bellow for your reference.
```
(base) diamantev@afrims-PowerEdge-R740:~/HIV_Quasiflow$ sudo nextflow run Quasi…
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* [ x ] I've read and understood the [contribution guidelines](https://github.com/Yoast/Yoast-SEO-for-TYPO3/blob/master/.github/CONTRIBUTING.md).
* [ x ] I've searched for any related issues and avoi…
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```
For Graham with help from Ludo and Goodesll as needed:
1) Clean up HIV recipe
1.5) Build online Survey system with screenshots or webGL images to collect
feedback/voting/critiquing
2) Collect fe…
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- [ ] Obtain datasets for SARS-CoV-2, HIV-1 and the human genome
- [ ] Align sequence databases - MAFFFT?
- [ ] Theta - Watterson's, Pi, lamarc, BEAST
- [ ] Analyze results - significance between s…
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- Two main data generation strategies: (1) amplicon sequencing and (2) shotgun sequencing
- At this time analysis one can choose calling variants or performing within-host evolution analyses inclu…
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> The HCP assess the new client to determine the KVP group status for Sero-discordant Couple
- [ ] **Variable** - Sero-discordant Couple
- [ ] **Field** - Do you know your HIV Status?
- [ ] **Subfiel…
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```
hp_pairwise_align --amplicons_fa haphpipe_assemble_02/final.fna --ref_fa ../HIV_B.K03455.HXB2.fasta --ref_gtf ../HIV_B.K03455.HXB2.gtf --outdir haphpipe_assemble_02
[--- pairwise_align ---] U…