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gwcbi
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haphpipe
NGS viral assembly and population genetics
GNU General Public License v3.0
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Issues with predict_haplo
#21
marieleoz
opened
1 year ago
0
refine assembly fails
#20
antoine4ucsd
opened
2 years ago
0
use_jdk_deflater
#19
antoine4ucsd
opened
2 years ago
1
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly
#18
thomasbtf
closed
2 years ago
2
cliquesnv output format
#17
mlbendall
closed
3 years ago
0
hp_demo does not work with "--outdir"
#16
mlbendall
closed
3 years ago
0
Hp updates
#15
maggiesteiner
closed
4 years ago
0
Checking that sequence is multiple of 3 for pairwise_align.
#14
kmgibson
opened
4 years ago
1
`hp_assemble_scaffold` cannot split the alignment variable
#13
kmgibson
closed
5 years ago
0
Create an option in assemble_amplicons.py stage to state min contig length
#12
kmgibson
closed
5 years ago
1
Add more commentary into stage-level codes
#11
kmgibson
opened
5 years ago
0
Create a "phylo" stage
#10
kmgibson
closed
5 years ago
0
Create a "phylo" stage
#9
kmgibson
closed
4 years ago
0
Replace GATK with Samtools pileup
#8
kmgibson
opened
5 years ago
1
Make HAPHPIPE into a Conda package
#7
kmgibson
opened
5 years ago
0
Add another haplotype caller module
#6
kmgibson
opened
5 years ago
1
Develop a summary module at cohort level
#5
kmgibson
closed
4 years ago
0
Develop phylogenetic tree module
#4
kmgibson
closed
4 years ago
0
Develop Multiple Sequence Alignment Module
#3
kmgibson
closed
4 years ago
0
Develop Demo Module
#2
kmgibson
closed
4 years ago
0
Fix HP_assemble_01 pipeline to handle updated Miniconda (I think)
#1
kmgibson
closed
5 years ago
2