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Hi! I'm trying to run canu on my fastq files but it's aborting. I tried v1.8 and v2.2, you can find the messages below:
```
canu-1.8/*/bin/canu -p ID1 -d canuassemble/ genomeSize=2.2m -nanopore-ra…
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Hello
I am trying run CARE but I get the follow error
STEP 2: Error correction
correctionStatusFlagsPerRead bytes: 0.506677 MB
Partial results may occupy 0 GB in memory. Remaining partial r…
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Hello
I am having an issue with canu assembly
this is the command I used `canu -p Vanella_contigs -d Canu_output genomeSize=50m -nanopore YT30_vanella_ont.fastq -pacbio Vanella_YT30.subreads.fastq.…
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```
$ canu -p serum -d /lustre/project/taw/ONRPan/canu/serum genomeSize=4.8m maxInputCo
verage=100 -nanopore serum.fastq
perl: warning: Setting locale failed.
perl: warning: Please check that your…
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Hello,
I'm getting the following error when using print(bloom_filter).
```
File "/home/user/.conda/envs/biopython/lib/python3.9/site-packages/probables/blooms/bloom.py", line 127, in __str__
…
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Hi, I wanted to ask if you could help me with canu metagenome assembly. I have tried the command you gave in this issue https://github.com/marbl/canu/issues/2150
It always starts to work but then i…
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Hi .
My canu job keeps failing at the assembly stage. I'm running my analysis on canu 2.1.1. on the university linux server with slurm scheduler, I've tried repeating twice and now i'm at the ask …
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Hello, I'm using canu 1.8 to correct my Ustilago maydis reads, I'm using oxford nanopore reads. The correction failed and the error message says the following:
```--
-- ERROR: Read coverage (0) i…
Iseez updated
2 years ago
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Hi, could someone help me restart Canu?
I cannot understand what is wrong -- if it's my installation, environment, scripts, or something else entirely. This was my second time running the command …
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Hello,
I have ONT reads that are mostly uncharacterized. Then I have two questions:
How is it possible to set kmer size for trio-binning, and, is it possible to use the -c (homopolymer compressi…