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hi!
I have some error of this function. Here is the code.
feature_table=read.xlsx("真菌丰度.xlsx",rowNames =T,sheet = 1)
sample_table=read.xlsx("sample.xlsx",rowNames =T,sheet = 1)
tax_table=read.xlsx…
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@emmanuelparadis @jgx65 @zkamvar @KlausVigo
Shall we coordinate for the releases of our packages?
From the most 'low level' (required by a lot of packages) to the high levels:
_ape, adegenet, pegas,…
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I have code for making a phylogenetic tree that relies on `ggtree`, `ggtreeExtra`, and `tidytree.` It was working perfectly for many months, up until several days ago, when `geom_hilight` and `geom_cl…
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Thanks for providing this package.
I am trying to use it for plotting LDA.
The res table that I get from the function successfully, but when I use:
```
res
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Integrating metagenomics with metabolomics for gut microbiota and metabolites profiling in acute pancreatitis – Yan Jia – Scientific Reports
https://www.nature.com/articles/s41598-024-72057-z
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**Describe the bug**
The SVGs generated by LEfSe are often incorrectly cropped and the taxonomy strings are not displayed fully. This is not a MMEDS issue, but a LEfSe issue.
**To Reproduce**
Ope…
cleme updated
3 months ago
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Hi, Thanks so much for developing such a useful package!
When I filter biomarkers with the lefse method, the species information in the resulting file is garbled.
k__Bacteria|p__Firmicutes|c__B…
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Hi, when I am running **plot_diff_cladogram**, an strange error occured.
"""
Select 50 significant features ...
Provided use_taxa_num: 200 >= total effective taxa number. Skip the selection ...
…
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{
"hub-mirror": [
"quay.io/biocontainers/lefse:1.0.7--1"
]
}
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{
"hub-mirror": [
"quay.io/biocontainers/lefse:1.1.2--pyhdfd78af_0"
]
}