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Dear Omnipath team,
I would like to know if it is currently possible to access all data in Omnipath using the Cytoscape plugin?
Or will it miss certain interactions when compared to OmnipathR and py…
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Hi CellChat Team,
I am encountering an issue where an arrow appears to be missing when I run netVisual_chord_gene on the "CX3C" pathway. Running other pathways produce chord plots as expected with…
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Thank you for releasing updates, I really appreciate it. By the way, I've noticed that the latest release of CE-Symm (version 2.2.2 from February 2022) is having issues retrieving a structure from the…
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## A71EV2A
### x0310:
* protein-ligand clash - wrong protein conformation exported?
* event map poor, diff map great - map files switched?
### x0416
[(mis-rendered) snapshot here]…
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It is totally awesome and grateful to share these useful algorithms in MolAICal. I carried out the molecular generation (-denovo grow) using your example in the 000-quickStart, but these results, gene…
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Dear all,
I have a two GPUS (1080Ti) server includes two CPUs, when I perform the test command:
build_mpirun_configfile "yank script --yaml=p-xylene-implicit.yaml"
I will get the error:
b…
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Example gepi input: AList: 196
yields:
- PMC id:
- PMC4303521
- sentence:
- The activated AHR/ARNT complex binds dioxin-response elements (DREs) in the upstream promoter of AHR-regulated gen…
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Parent issue in the roadmap: https://github.com/xchem/fragalysis-backend/issues/197
Significant actions of the user shall be tracked.
Tracked shall be following actions:
1. Loaded target
2. Si…
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AutoDock-GPU version: v1.5-release
Running 183279 docking calculations
Cuda device: NVIDIA GeForce RTX 3080 Ti
Available memory on device: 11411 MB (t…
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* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…