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### Data Owner Name
Johns Hopkins University Applied Physics Laboratory
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://bossdb.…
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Have a process for initial data quality checks (which features do they check).
What components of experimental methodology, standardization, & automation could be borrowed for lightsheet mFISH?
Zoe M…
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All of the current analysis steps (`deskew`, `estimate-deskew`, `estimate-bleaching`) read the raw `.ndtiff` as input...a pragmatic choice for our initial analysis steps.
We're now reaching a point…
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https://data.dev.sennetconsortium.org/edit/dataset?uuid=bff9c8c741bda27c391c4e992e81a27a/
Due to the entity constraints set by the Entity API the only allowable data type is Lightsheet Microscopy
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I have a pytorch model of UNet 3D (https://github.com/wolny/pytorch-3dunet), it is successfully exported to onnx by supplyinh an input _3d_x = torch.rand(1, 1, 32, 64, 64) and the graph looks fine. H…
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Exposure time is not correctly set as given in `channel_exposures_ms` when acquisition uses z-sequencing. Working to fix this. Here is a script to replicate this bug:
```python
from pycromanager i…
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We want the config parameters to be done in terms familiar to lightsheet microscopists.
Specifically, we want to think about tuning the camera settings in terms of `slit_width` where `slit_width` i…
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Hello everybody,
We acquired a LLS system recently from Zeiss and a CZI File can go up to a Tb without too much difficulties. (for instance 2 channels, 1024 x 450 pixels, 2000 slices, 300 timepoin…
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## Bug report
## Description of the problem
I'm receiving an error during registration:moving_spots. A few tasks succeed but several fail.
The input files are two rounds of 3x5 tiles but w…
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Currently in SenNet we only support primary data types but we need to add additional secondary data types that are supported by the dataset pipeline processing. Some of these secondary data types incl…