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czbiohub-sf
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shrimPy
shrimPy: Smart High-throughput Robust Imaging & Measurement in Python
BSD 3-Clause "New" or "Revised" License
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O3 autofocus improvement
#165
ieivanov
opened
1 month ago
0
Stitch circle grid
#164
ieivanov
closed
1 month ago
0
Bugfix shift distance
#163
ahillsley
opened
1 month ago
0
Bug if pixel_size = 1.0 um
#162
ahillsley
opened
1 month ago
0
Depreciation warnining
#161
tayllatheodoro
closed
1 month ago
2
updating code for pydantic v2
#160
tayllatheodoro
closed
2 months ago
1
ShrimPy need to be updated to Pydantic v2
#159
tayllatheodoro
closed
2 months ago
0
Stitching bugfix
#158
ieivanov
opened
3 months ago
0
missing packages to run the acquisition
#157
edyoshikun
closed
2 months ago
1
Merging autotracker
#156
edyoshikun
opened
3 months ago
1
Update README.md
#155
ieivanov
closed
3 months ago
0
adding configurable CZYX chunk size
#154
edyoshikun
closed
3 months ago
1
Porting_ip_funcs
#153
edyoshikun
closed
3 months ago
0
Bug in parallelization over t and c
#152
edyoshikun
closed
4 months ago
0
Name our new image processing library
#151
talonchandler
closed
2 months ago
6
Improve registration docs and naming
#150
talonchandler
closed
4 months ago
1
Restrict to numpy<2
#149
ieivanov
closed
4 months ago
1
Fix bug in test_estimate_stabilization
#148
ieivanov
closed
4 months ago
1
Rename `mantis` to `shrimpy`
#147
talonchandler
closed
4 months ago
1
GPU deskew
#146
talonchandler
closed
4 months ago
4
CLI for concatenating zarr stores
#145
edyoshikun
closed
4 months ago
4
Hardcoded focus finding variables in stabilization algorithm
#144
edyoshikun
opened
4 months ago
3
Apply_affine should allow custom target channels rather than copying all
#143
edyoshikun
opened
4 months ago
0
migrating update scale metadata utility to iohub
#142
aaronalvarezcz
closed
1 month ago
2
Mappings from physical components (phase,retardance,orientation) to HSV /JCh
#141
edyoshikun
closed
4 months ago
5
Slurmkit copy n paste
#140
edyoshikun
closed
4 months ago
1
Acquisition: add check for sufficient disk space
#139
ieivanov
opened
6 months ago
0
Acquisition engine fixes
#138
ieivanov
closed
6 months ago
0
Methods to stitch a position grid
#137
ieivanov
closed
4 months ago
2
Registration: existing plugin
#136
ziw-liu
opened
7 months ago
0
Methods to stitch a position grid array
#135
ieivanov
closed
4 months ago
2
Fix t_idx and additional channels
#134
edyoshikun
closed
4 months ago
2
Cannot apply affine transform
#133
ziw-liu
closed
4 months ago
1
Editable installation in CONTRIBUTING.md
#132
ziw-liu
closed
9 months ago
0
PSF measurement routine
#131
ieivanov
closed
4 months ago
1
PSF measurement, simulation, and deconvolution
#130
talonchandler
closed
3 months ago
6
GPU peak detection with torch
#129
ziw-liu
closed
9 months ago
1
XY and Z drift stabilization; replaces #108
#128
ieivanov
closed
4 months ago
5
bump iohub dependencies
#127
edyoshikun
closed
3 months ago
3
Registration: in `estimate_affine` check that selected points are not outside of the data volume when in grid mode
#126
ieivanov
opened
10 months ago
0
Registration: check how `apply_affine` handles positions will all nans or zeros
#125
ieivanov
opened
10 months ago
0
Registration: find better cropping algorithm
#124
ieivanov
opened
10 months ago
0
Refactor and unify reconstruction calls
#123
ieivanov
opened
10 months ago
0
CLI renaming
#122
ieivanov
closed
1 month ago
0
Registration: rename `target` to `fixed` and `source` to `moving` to match convention in other image registration pipelines
#121
ieivanov
opened
10 months ago
0
Remove white spaces in readme
#120
ieivanov
closed
10 months ago
0
Update readme with link to preprint
#119
ieivanov
closed
10 months ago
2
Registration refator
#118
ieivanov
closed
10 months ago
0
Update readme
#117
mattersoflight
closed
11 months ago
0
Update readme.md
#116
ieivanov
closed
11 months ago
0
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