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The Glycinemine report for a GWAS QTL paper only presents the GWAS QTL name used in the paper. Example: https://mines.legumeinfo.org/glycinemine/report.do?id=305000008&trail=%7c305000008. It does no…
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Hi,
Can you share the command to save the manhattan plot in .png format using fastman?
Thanks
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Hi, first of all thank you for such a great package. I am trying to use the rMVP for visualization of GAPIT GWAS results. particularly I am interested in multiple trait Manhattan plots. Bonferroni cor…
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Thank you for the great tool. I apologize if I missed it, but can the location of the legend be changed? My SNPs of interest fall in the same location as the legend. Thanks.
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Hello MetaXcan
I am trying to use SPrediXcan.py with the mashr Brain_Cortex training model db file, covariance file txt.gz, and GWAS summary data(chromosomes information compiled in just one text fi…
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## `README.md` with commands and analyses
**0/2**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| Commands for Step 1.1 | 0.33 | 0.33 |
| Commands for Step 2.1 | 0.3…
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Hi,
I am following the tutorial (https://bcm-uga.github.io/lfmm/articles/lfmm) for lfmm analysis. In my analysis, I am using .raw file as genotype and a phenotype file.
Input file: gi.lfmm
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as the title,Should we extract overlap or union snps among the traits before plotting Manhattan for GWAS with different SNP positions that running for different traits?
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I didn't find ... could you describe the format with a sample data for the gwas/manhattan plot? THANKS!
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Is it possible to add labels to say, the top 10 or top 5% scoring markers in a manhattan plot?