-
Hi,
Thanks for this fantastic tool.
I was interested in simulating Illumina paired reads with art_illumina without errors. I can see that art_illumina enables it by setting the flag ` --errfree…
-
Hello,
Rather than an issue with code, I would need an advice on data generation.
I would like to generate a sample of some species using only my own genomes.
I only need to generate reads and …
-
Getting the above error when supplying my own distributions file for the community. Running the latest version of Camisim with the conda environment from here: https://github.com/CAMI-challenge/CAMISI…
-
Hi,
can you point me to where the MBARC error profile for ART is coming from? I could not find any information on that.
In any way, I think it introduces way to high error rates that are more co…
-
Hi,
First of all thanks for developing and maintaining this tool!
I'm simulating a 5 samples (5Gbp each) using two communities derived from the supplied genomes, but eventually, after the completion…
-
Hello ! trying to run the simulation i encounter this error :
```
ERROR: [MetagenomeSimulationPipeline] Required file not found! Was design of communities not completed? in line 85
```
I verified …
-
First, I would like to thank you for this great tool and its maintenance!
Second, I would love to better understand the differences in simulating mutations for real genomes and simulated genomes. Doe…
-
Hi there, I've been trying to run Camisim with NanoSim to simulate ONT reads. I've tested the program with the art simulator and works but I can't figure out how to run it with NanoSim. The error I'm …
-
## Testing the effect of error profile on quantification.
As we noticed that there was a quite precise 2 factor error in kmer quantification we tried investigating this.
It was also pointed ou…
-
I'd like to use CAMISIM to simulate a metagenome with a lot of strain level variation, but I am having some trouble. The documentation states "Artificial strains evolved from real genomes are added to…