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LC-MS metabolomics WDL development
- [ ] Based on the CLI command for LC-MS data dependent data process, create a WDL workflow declaration and configuration json input file.
The workflow should…
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Hi,
I successfully ran the plot_enrichment_detailed function a month ago using an annotation matrix for a metabolomics dataset. The output correctly labeled the significant metabolites.
Now, w…
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The part I find is related to the SECIM_GUI package listed within toolbox. It seems some function are duplicated between `/metabolomics_toolbox/packages/SECIM_GUI/loadFileFunctions/` and `/metabolomic…
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I just had the [`MSnbase` devel call](https://github.com/lgatto/MSnbase/issues/454) with @jorainer and he updated me about the discussions at the recent metabolomics workshop, including the MS scheme …
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Include alleles for the following papers
As a validation, they will need to appear here:
https://www.mousephenotype.org/data/publications
Papers:
1. Rapid and Integrative Discovery of Retina Regula…
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I think the full list of Globus groups is:
CFDE-Portal-Curator
CFDE-Portal-Admin
CFDE-Portal-Reviewers
NIH CFDE 4DN Approvers
NIH CFDE 4DN Reviewers
NIH CFDE 4DN Submitters
NIH CFDE ExRNA App…
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Molecular Transducers of Physical Activity Consortium (MoTrPAC) has started putting their [data out](https://motrpac-data.org). Its mostly rat for now. We need to explore what kind of data they have t…
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With @hechth @bgruening
The EDAM ontology tools view is a great concept but would be much more useful if the following were addressed:
1. Text-searchable ontologies. Currently I have to scroll th…
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Hi! There exists some errors when I run the last part of Untargeted Metabolomics Pre-Processing Chapter in Python3.10 or Python3.11 with PyOpenMS 3.1.0. Could you tell me how to resolve it?
 for linkin…